Pairwise Alignments

Query, 1213 a.a., Transcription-repair-coupling factor from Azospirillum sp. SherDot2

Subject, 1167 a.a., Transcription-repair coupling factor from Acidovorax sp. GW101-3H11

 Score =  728 bits (1879), Expect = 0.0
 Identities = 453/1184 (38%), Positives = 662/1184 (55%), Gaps = 58/1184 (4%)

Query: 6    LQPGRAGRLLIGGAPEGH-DARILAELAQ--KAGGYGLLHVALDDTRCALLAEALAFFAP 62
            L PG+   L     PEG  D+ +LA LA+  KA G     V  D T    L E ++FFAP
Sbjct: 15   LSPGKRFTL---PRPEGSADSLLLARLAERDKAAGRTTAIVTADATDAQRLIEEMSFFAP 71

Query: 63   KLEVLTFPAWDCLPYDRVSPNGGIVARRIDTLTRLIARRDAASNRDGLAPLIVLTTVNAV 122
             L    FP W+ LPYD  SP+  +++ R+ TL R I+++D  +  D     +VL      
Sbjct: 72   GLRCALFPDWETLPYDTFSPHQDLISERLATLWR-ISQKDKDTGAD-----VVLVPATTA 125

Query: 123  VQKVPPRSAFKNAVFSAKLRDRIDLEKLQRYLAGNGYTRAQTVREPGEFAVRGGIVDLFP 182
            + ++ P S      F  K++ ++D  K +  L   GY+    V  PGE+AVRGG++DLFP
Sbjct: 126  LYRLAPPSFLAGYTFHFKIKQKLDEAKFKAQLTLAGYSHVSQVVSPGEYAVRGGLIDLFP 185

Query: 183  PGTEEPLRLDLFGDELEGVRAFDPMTQRTTDKRDSVELKPMSEVFLDDAGIARFRSGYRE 242
             G+  P R+DLF +E++ +R FDP +QR+      V L P  E  +DD   A+FRS +RE
Sbjct: 186  MGSLVPFRVDLFDNEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDDDARAKFRSRWRE 245

Query: 243  LFGAVTDDDPLYEAISAGRSYGGMEHWLPLFHESMDTVLDYLPRGIVSLDHQANEARDAR 302
            +         +Y+ + AG +  G+E++LPLF +   TV DYL      + H   E    R
Sbjct: 246  MLEGDPTKSRIYKDMGAGVATAGIEYYLPLFFDETATVFDYLGGEATVVLHGDLEPAFQR 305

Query: 303  IAQVVDFHASRDGMMTIEKRAGSPVYKPVPVASMFLDGIGWDALLAERAVAQLQIFSTPP 362
              Q      ++D    ++   G P    +P  ++FL    +     E A   ++     P
Sbjct: 306  FWQ-----DTKDRFRLVQ---GDPERPALPPEALFLSADQFYTRSKEHAQLSIR-----P 352

Query: 363  GIKGTVDAGGKRGHDFAEERNRPDVNVFDAVKDHIRALRADGR----RVLIAGYSAGSRD 418
            G++   D      H         D++V    +D +  L A  R    RVL+   S G R+
Sbjct: 353  GVEDVDD--NPHFHKLG------DLSVVRGAEDPLARLHAHIRNTQHRVLLLAESDGRRE 404

Query: 419  RLSNVLADHGIPGLEPA-ESMEDVRRFDRGIIGTIVLGMEHGFTSADLAV--ITEQDILG 475
             L + L   G+    PA +S+ +    D   +G    G+  GF+  +  +  +TE ++  
Sbjct: 405  SLLDFLRASGVN--PPAFDSLAEFEGADDEKVGIATAGLTVGFSWIEDGIDFVTETELFA 462

Query: 476  DRLVRPAKKKRKAAN----FIAEHSALHEGDIVVHMDHGIGRYDGLETLDV-------TG 524
                   +KK++  +     I + + L+ GD VVH  HGIGRY GL  +DV       T 
Sbjct: 463  AGPTTRRRKKQEQVSDVEALIKDLAELNVGDPVVHSAHGIGRYRGLVNMDVGNKNPDGTP 522

Query: 525  APHDCLRLIYEGGDKLYVPVENIEVLSRYGSEDAN-VQLDKLGGAGWQGRKARVKKRLKD 583
            A  + L L Y     LYVPV  ++++SRY    A+   L KLG   W+  K +  ++++D
Sbjct: 523  AMQEFLHLEYADKAVLYVPVSQLQLISRYTGVSADEAPLHKLGSGQWEKAKRKAAEQVRD 582

Query: 584  MAEALLKIAAERMLKKADPVLTPEGVYQEFAARFPYPETDDQLKAIEDIFTDLGSGRPMD 643
             A  LL I A R L++          Y+ FA  F + ET DQ  AI  +  D+ S RPMD
Sbjct: 583  SAAELLNIYARRALRQGHAFRYSPQDYETFANDFGFDETADQNAAIHAVIQDMISPRPMD 642

Query: 644  RLVCGDVGFGKTEVALRAAFMVAMSGKQVAVVVPTTLLARQHFRTFSTRFNGLPVRVVQL 703
            RLVCGDVGFGKTEVALRAAF+    GKQVA + PTTLLA QH++T   RF+  PV+V ++
Sbjct: 643  RLVCGDVGFGKTEVALRAAFVAVTGGKQVAFLAPTTLLAEQHYQTLVDRFSKWPVKVAEV 702

Query: 704  SRMVTAREQTLVKKELAEGTADIVVGTHALLAKGLDFKRLGMVIVDEEQHFGVKQKERLK 763
            SR  + +E T   K + +GT DIVVGTH LL++   F  LG++I+DEE  FGV+ KE++K
Sbjct: 703  SRFRSGKEITSAIKGIGDGTVDIVVGTHKLLSESTKFHNLGLLIIDEEHRFGVRHKEQMK 762

Query: 764  ELRADIHVLTLTATPIPRTLQMALSGVRELSLIATPPVDRLAVRTFVLPYDPVVIREAIL 823
             LRA++ VLTLTATPIPRTL MAL G+R+LS+IAT P  RLA++TFV      VIREA+L
Sbjct: 763  ALRAEVDVLTLTATPIPRTLGMALEGLRDLSVIATAPQRRLAIKTFVRNEGTGVIREAVL 822

Query: 824  REHYRGGQSFYVCPRVEDLAKVAERVRELVPEVKIVTAHGQMPASELEDVMTAFDEGKFE 883
            RE  RGGQ +++   VE +    +++ E++PE +I  AHGQMP  ELE VM  F   ++ 
Sbjct: 823  RELKRGGQVYFLHNEVETIENRRQKLEEILPEARIAVAHGQMPERELERVMRDFVAQRYN 882

Query: 884  VLLATNIIESGLDIPNANTLIVHRADLFGLAQLYQIRGRVGRSKKRGYAYLTYAPNKPLS 943
            +LL + IIE+G+D+P ANT+I+ RAD FGLAQL+Q+RGRVGRS  + YAYL     + L+
Sbjct: 883  ILLCSTIIETGIDVPTANTIIMSRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDTEGLT 942

Query: 944  GTAQQRLHVIETLDSLGAGFQLASHDMDIRGAGNLLGEEQSGQVREVGVELYQQMLEEAV 1003
              A QRL  I+ ++ LG+GF LA HD++IRGAG +LGE QSG + EVG +LY +ML EAV
Sbjct: 943  KQAAQRLDAIQQMEELGSGFYLAMHDLEIRGAGEVLGENQSGNMLEVGFQLYNEMLNEAV 1002

Query: 1004 ASARASMQEGAVAAAAAQEWVPQINLGTPVLIPESYVPDLTVRLSLYRRIADLVDRAEVD 1063
             S +A  +   ++  +       INL  P L+P+ Y  D+ +RLS Y+++A      ++D
Sbjct: 1003 KSLKAGKEPDLLSPLSV---TTDINLHAPALLPDDYCGDVHLRLSFYKKLATAKTPDQID 1059

Query: 1064 GFAAELIDRFGKLPEEVENLLDVVTIKRWCKQANIDRVDAGPKGLVLAFHDNFYAEPAKL 1123
            G   E++DRFGKLP + + L+DV  ++   +   + +VDA P  + + F      +P ++
Sbjct: 1060 GLLEEIVDRFGKLPPQAQTLIDVHRLRVLSQPYGVVKVDAAPGVINITFKPQPPIDPMRI 1119

Query: 1124 LTYIAQHLTLMKLRPDHKLVYIREWPDPAARVRSVQKLVKDLAE 1167
            +  I ++  + KL  + KL   RE  DP  R + V+ +++ L +
Sbjct: 1120 IELIQKNKHI-KLAGNEKLRIERELKDPKDRAQMVRDVLRSLGQ 1162