Pairwise Alignments

Query, 1213 a.a., Transcription-repair-coupling factor from Azospirillum sp. SherDot2

Subject, 1157 a.a., transcription-repair coupling factor (mfd) from Sphingomonas koreensis DSMZ 15582

 Score = 1154 bits (2985), Expect = 0.0
 Identities = 611/1164 (52%), Positives = 804/1164 (69%), Gaps = 29/1164 (2%)

Query: 14   LLIGGAPEGHDARILAELAQKAGGYGLLHVALDDTRCALLAEALAFFAPKLEVLTFPAWD 73
            L + G P G    +LA+LA +A   G +++A D++    +A   AFFAP+LE++ FPAWD
Sbjct: 14   LTLSGVPAGFLPWLLADLA-RASTTGAVYIAPDESAMRAVASTAAFFAPELEIVQFPAWD 72

Query: 74   CLPYDRVSPNGGIVARRIDTLTRLIARRDAASNRDGLAPLIVLTTVNAVVQKVPPRSAFK 133
            CLPYDR SP   ++A R+  L  L  +           P ++LTTVNA  Q+    + F+
Sbjct: 73   CLPYDRASPTLRVMAERMAALAALQGKTSK--------PRLILTTVNAATQRT--LTPFR 122

Query: 134  NAVFSAKLR--DRIDLEKLQRYLAGNGYTRAQTVREPGEFAVRGGIVDLFPPGTEEPLRL 191
                +A+L   +RI L+KL   L+ NGY R  TV + GEFAVRGG+VDLFP G+E+ LRL
Sbjct: 123  VRQMTARLAPGERISLDKLAALLSANGYVRTDTVHDSGEFAVRGGLVDLFPSGSEQGLRL 182

Query: 192  DLFGDELEGVRAFDPMTQRTTDKRDSVELKPMSEVFLDDAGIARFRSGYRELFGAVTDDD 251
            D FGDE+E VR FDP  QRTT + D   L P SE  LD+  I RFR+ YRE FGA    D
Sbjct: 183  DFFGDEIESVRTFDPADQRTTGRVDGFTLLPASEALLDEDTIKRFRTRYREKFGATATGD 242

Query: 252  PLYEAISAGRSYGGMEHWLPLFHESMDTVLDYLPR-GIVSLDHQANEARDARIAQVVDFH 310
            PLY+AIS GR   GMEHWLPLF E ++T+ ++LP   ++  D     A + R   + D+ 
Sbjct: 243  PLYQAISDGRRLAGMEHWLPLFEERLETLFEHLPADAVIVRDAGDAGAAENRFEAIADYQ 302

Query: 311  ASRDGMMTIEKRAGSPVYKPVPVASMFLDGIGWDALLAERAVAQLQIFSTPPGIKGTVDA 370
            A+R    + +  AGS  Y+P+    ++L    WD  L E A A L      P     +D 
Sbjct: 303  ANRVRAQSTD--AGS--YRPLGTDQLYLLPAEWDKRLKE-AKAHLATPFHEPESATVLDF 357

Query: 371  GGKRGHDFAEERNRPDVNVFDAVKDHIRALRADGRRVLIAGYSAGSRDRLSNVLADHGIP 430
                  DFA ER     N+++AV +H+  LR  G++ ++A YS GSR+RL  +LADHG+P
Sbjct: 358  AVDGPRDFAPER-AAGTNIYEAVAEHLAKLRKAGKKPILASYSIGSRERLKGLLADHGLP 416

Query: 431  GLEPAESMEDVRRF-----DRGIIGTIVLGMEHGFTSADLAVITEQDILGDRLVRPAKKK 485
                AES ++         D G +  IVL ++HGFTS ++A++TEQD+LGDRLVR  K+K
Sbjct: 417  NAVFAESWQEALGVAAGGRDSGNVALIVLPLDHGFTSPEVALLTEQDMLGDRLVRRNKRK 476

Query: 486  RKAANFIAEHSALHEGDIVVHMDHGIGRYDGLETLDVTGAPHDCLRLIYEGGDKLYVPVE 545
            +    F+AE + L  GD+VVH++HGIGRY+GL  + V  APHDC+ L Y GGDKLYVPVE
Sbjct: 477  KSTDAFLAELATLSPGDLVVHLEHGIGRYEGLTQIPVQKAPHDCVALTYAGGDKLYVPVE 536

Query: 546  NIEVLSRYGSEDANVQLDKLGGAGWQGRKARVKKRLKDMAEALLKIAAERMLKKADPVLT 605
            N+EVLSRYGS +    LD+LGG  WQ RK+R+K+R++++A  L+  AA R ++  + +  
Sbjct: 537  NLEVLSRYGSSEEGAALDRLGGEAWQRRKSRMKERIREIAGELIATAAARAVRPGEVLEP 596

Query: 606  PEGVYQEFAARFPYPETDDQLKAIEDIFTDLGSGRPMDRLVCGDVGFGKTEVALRAAFMV 665
              G Y  F  RFP+ ETDDQ +AI D+  DL +GRPMDRLV GDVGFGKTEVALRAAF+ 
Sbjct: 597  DPGGYPAFVDRFPFTETDDQDRAIGDVLEDLAAGRPMDRLVVGDVGFGKTEVALRAAFVA 656

Query: 666  AMSGKQVAVVVPTTLLARQHFRTFSTRFNGLPVRVVQLSRMVTAREQTLVKKELAEGTAD 725
            AM+G+QVAVV PTTLLARQHF  F  RF G P+R+ +LSR+V A E    ++ L  G  D
Sbjct: 657  AMAGQQVAVVCPTTLLARQHFTNFVQRFEGFPIRIGRLSRLVPAAEAKATREGLESGQID 716

Query: 726  IVVGTHALLAKGLDFKRLGMVIVDEEQHFGVKQKERLKELRADIHVLTLTATPIPRTLQM 785
            IVVGTHA+LAKG++FKRLG+VIVDEEQ FGV  KERLK L+AD+HVLTLTATPIPRTLQM
Sbjct: 717  IVVGTHAVLAKGIEFKRLGLVIVDEEQRFGVTHKERLKGLKADVHVLTLTATPIPRTLQM 776

Query: 786  ALSGVRELSLIATPPVDRLAVRTFVLPYDPVVIREAILREHYRGGQSFYVCPRVEDLAKV 845
            A+SG+RELS+I TPPVDRLAVRT+V+P+DPVV+REA+LREHYRGGQSF V PR+ DL  +
Sbjct: 777  AMSGLRELSVIQTPPVDRLAVRTYVMPWDPVVLREALLREHYRGGQSFLVTPRIADLPDI 836

Query: 846  AERVRELVPEVKIVTAHGQMPASELEDVMTAFDEGKFEVLLATNIIESGLDIPNANTLIV 905
             + +RE VPEV+ V AHGQM A E+E+ M+AF + K+EVL++T IIESGLDIP+ANT+I+
Sbjct: 837  EKFLREEVPEVRYVVAHGQMAAGEVEERMSAFYDKKYEVLVSTTIIESGLDIPSANTMII 896

Query: 906  HRADLFGLAQLYQIRGRVGRSKKRGYAYLTYAPNKPLSGTAQQRLHVIETLDSLGAGFQL 965
            +RAD FGLAQLYQ+RGRVGR+K R YAY+T AP + ++  A++RL V+  L+SLGAGFQL
Sbjct: 897  NRADRFGLAQLYQLRGRVGRAKTRAYAYMTTAPQRLMTEAAEKRLKVLSDLESLGAGFQL 956

Query: 966  ASHDMDIRGAGNLLGEEQSGQVREVGVELYQQMLEEAVASARASMQEGAVAAAAAQEWVP 1025
            ASHD+DIRGAGNLLG+EQSG ++EVG ELYQ MLEEA+  A+A    G +A A  ++  P
Sbjct: 957  ASHDLDIRGAGNLLGDEQSGHIKEVGYELYQSMLEEAIMDAKA----GGLADARPRDLSP 1012

Query: 1026 QINLGTPVLIPESYVPDLTVRLSLYRRIADLVDRAEVDGFAAELIDRFGKLPEEVENLLD 1085
            QI +  P+LIPE +VPDL +R+ LYRR+ ++ D+  +D FAAE+IDRFGKLPEE ENLL 
Sbjct: 1013 QITVDAPILIPEGFVPDLDLRMGLYRRLNEVEDKRGIDEFAAEMIDRFGKLPEETENLLL 1072

Query: 1086 VVTIKRWCKQANIDRVDAGPKGLVLAFHDNFYAEPAKLLTYIAQHLTLMKLRPDHKLVYI 1145
            ++  K   K+A I ++D GPKG +++FH++ +     L+ Y+A+     KLRPD KLV  
Sbjct: 1073 LIEAKLNAKRACIAKIDVGPKGALVSFHEDSFPSVEGLMAYVAKLEGTAKLRPDMKLVIS 1132

Query: 1146 REWPDPAARVRSVQKLVKDLAEMA 1169
            R W  P AR+ +  +L + LA+ A
Sbjct: 1133 RAWATPRARLNAAVQLSRGLAKAA 1156