Pairwise Alignments

Query, 1213 a.a., Transcription-repair-coupling factor from Azospirillum sp. SherDot2

Subject, 1160 a.a., transcription-repair coupling factor (superfamily II helicase) from Paraburkholderia graminis OAS925

 Score =  722 bits (1864), Expect = 0.0
 Identities = 444/1131 (39%), Positives = 635/1131 (56%), Gaps = 54/1131 (4%)

Query: 53   LAEALAFFAPKLEVLTFPAWDCLPYDRVSPNGGIVARRIDTLTRLIARRDAASNRDGLAP 112
            L++ + FFAP   V   P W+ LPYD  SP+  +V+ R+ TL       D    R     
Sbjct: 64   LSQEIGFFAPDARVRLLPDWETLPYDTFSPHQDLVSERLATL------HDLGEGRCD--- 114

Query: 113  LIVLTTVNAVVQKVPPRSAFKNAVFSAKLRDRIDLEKLQRYLAGNGYTRAQTVREPGEFA 172
             I+L      + ++PP S      FS    +R+D  KL+  L   GY     V  PGE+ 
Sbjct: 115  -ILLVPATTALYRMPPASFLAAYTFSFSQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYC 173

Query: 173  VRGGIVDLFPPGTEEPLRLDLFGDELEGVRAFDPMTQRTTDKRDSVELKPMSEVFLDDAG 232
            VRG ++DL+P G+  P R+DLF D+++ +RAFDP TQR+      V L P  E   D+A 
Sbjct: 174  VRGSLLDLYPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVKDVRLLPGREFPFDEAA 233

Query: 233  IARFRSGYRELFGAVTDDDPLYEAISAGRSYGGMEHWLPLFHESMDTVLDYLPRGIVSLD 292
               FRS +RE F        +Y+ I  G    G+E++LPLF +   T+  YLP+G   L 
Sbjct: 234  RTAFRSRWRETFEGDPSRASIYKDIGNGVPSAGIEYYLPLFFDETATLFHYLPQG-AQLA 292

Query: 293  HQANEARDARIAQVVDFHASRDGMMTIEKRAGSPVYKPVPVASMFLDGIGWDALLAERAV 352
               +   DA I +  +    R   ++ ++    P+ +P     +FL     D     +  
Sbjct: 293  FIGD--LDAAIRRFTNDTKQRYNFLSHDR--DRPILEP---QRLFLTDE--DFFTLAKPF 343

Query: 353  AQLQIFSTPPGIKGTVDAGGKRGHDFAEERNRPDVNVFDAVKDHIRALRA----DGRRVL 408
            A+L +           +AGG            P++ +     D + ALRA       RVL
Sbjct: 344  ARLVL---------PANAGGGWATPL------PNLAIDRHADDPVSALRAFLDTTPNRVL 388

Query: 409  IAGYSAGSRDRLSNVLADHGIPGLEPA--ESMEDVRRFD-RGIIGTIVLGMEHGFTSADL 465
             A  SAG R+ L  +LAD+    L+PA  +S +D    D R  +G   L          +
Sbjct: 389  FAAESAGRRETLLQLLADNH---LKPASSDSFQDWLTGDARFSLGVAPLANGFAVPVDGI 445

Query: 466  AVITEQDILGDRLVRPAKKKRKAAN----FIAEHSALHEGDIVVHMDHGIGRYDGLETLD 521
            A+ITE ++ G    R  +++++ A+     + + S L  GD VVH  HGIGRY GL T+D
Sbjct: 446  AIITETELYGPLARRAGRRRQEQASNVDSMVRDLSELKVGDPVVHSQHGIGRYMGLVTMD 505

Query: 522  VTGAPHDCLRLIYEGGDKLYVPVENIEVLSRY-GSEDANVQLDKLGGAGWQGRKARVKKR 580
            +     + L L Y G  KLYVPV  + V+SRY G++  +  L  LG   W+  K +  ++
Sbjct: 506  LGEGETEFLHLEYAGDSKLYVPVAQLHVISRYSGADPESAPLHSLGSGQWEKAKRKAAQQ 565

Query: 581  LKDMAEALLKIAAERMLKKADPVLTPEGVYQEFAARFPYPETDDQLKAIEDIFTDLGSGR 640
            ++D A  LL + A R  +           Y +FA  F + ET DQ  AI  +  D+ SG+
Sbjct: 566  IRDTAAELLNLYARRAARSGHAFALEPKDYVKFAESFGFEETPDQAAAIAAVIGDMTSGK 625

Query: 641  PMDRLVCGDVGFGKTEVALRAAFMVAMSGKQVAVVVPTTLLARQHFRTFSTRFNGLPVRV 700
            PMDRLVCGDVGFGKTEVALRAAF+  M GKQVA++ PTTLLA QH +TF+ RF+  PVR+
Sbjct: 626  PMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHTQTFTDRFSDWPVRI 685

Query: 701  VQLSRMVTAREQTLVKKELAEGTADIVVGTHALLAKGLDFKRLGMVIVDEEQHFGVKQKE 760
             +LSR  + +E     +++ EG+ DIV+GTH LL+  + FKRLG+VI+DEE  FGV+QKE
Sbjct: 686  AELSRFKSTKEVNAAIQQINEGSVDIVIGTHKLLSSDVQFKRLGLVIIDEEHRFGVRQKE 745

Query: 761  RLKELRADIHVLTLTATPIPRTLQMALSGVRELSLIATPPVDRLAVRTFVLPYDPVVIRE 820
             LK LRA++ VLTLTATPIPRTL MAL G+R+ S+IAT P  RLA++TFV   +  VIRE
Sbjct: 746  ALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESVIRE 805

Query: 821  AILREHYRGGQSFYVCPRVEDLAKVAERVRELVPEVKIVTAHGQMPASELEDVMTAFDEG 880
            A+LRE  RGGQ +++   VE +    + +  LVPE +I  AHGQM   ELE VM  F   
Sbjct: 806  AMLRELKRGGQVYFLHNEVETIENRRQMLEALVPEARIAVAHGQMHERELERVMRDFVAQ 865

Query: 881  KFEVLLATNIIESGLDIPNANTLIVHRADLFGLAQLYQIRGRVGRSKKRGYAYLTYAPNK 940
            +  VLL T IIE+G+D+P+ANT+++HR+D FGLAQL+Q+RGRVGRS  + YAYL     +
Sbjct: 866  RANVLLCTTIIETGIDVPSANTILIHRSDKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQ 925

Query: 941  PLSGTAQQRLHVIETLDSLGAGFQLASHDMDIRGAGNLLGEEQSGQVREVGVELYQQMLE 1000
             L+  AQ+RL  I+ ++ LG+GF LA HD++IRG G +LG++QSG++ E+G +LY  ML 
Sbjct: 926  GLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQLYTDMLN 985

Query: 1001 EAVASARASMQEGAVAAAAAQEWVPQINLGTPVLIPESYVPDLTVRLSLYRRIADLVDRA 1060
            +AV + +   +    A  AA     +INL  P ++P  Y  D+  RLSLY+R+A+     
Sbjct: 986  DAVKALKDGKEPDLTAPLAA---TTEINLHAPAILPADYCGDVQERLSLYKRLANCEHSD 1042

Query: 1061 EVDGFAAELIDRFGKLPEEVENLLDVVTIKRWCKQANIDRVDAGPKGLVLAFHDNFYAEP 1120
             +DG   ELIDRFGKLP +   L++   ++   K   I ++DAG   + L F  N   + 
Sbjct: 1043 SIDGIQEELIDRFGKLPPQAHALVETHRLRLAAKPLGISKIDAGEAVIGLQFIPNPPIDA 1102

Query: 1121 AKLLTYIAQHLTLMKLRPDHKLVYIREWPDPAARVRSVQKLVKDLAEMASG 1171
             +++  + +H  + KL    KL      PD A RV +V++ ++ L   + G
Sbjct: 1103 MRIIEMVQKHKHI-KLAGQDKLRIETRSPDLAVRVATVKETLRALGSPSRG 1152