Pairwise Alignments

Query, 1213 a.a., Transcription-repair-coupling factor from Azospirillum sp. SherDot2

Subject, 1160 a.a., transcription-repair coupling factor from Paraburkholderia bryophila 376MFSha3.1

 Score =  720 bits (1858), Expect = 0.0
 Identities = 444/1139 (38%), Positives = 636/1139 (55%), Gaps = 70/1139 (6%)

Query: 53   LAEALAFFAPKLEVLTFPAWDCLPYDRVSPNGGIVARRIDTLTRLIARRDAASNRDGLAP 112
            L++ + FFAP+  V   P W+ LPYD  SP+  +V+ R+ TL       D    R     
Sbjct: 64   LSQEIGFFAPQARVRLLPDWETLPYDTFSPHQDLVSERLATL------HDLGEGRCD--- 114

Query: 113  LIVLTTVNAVVQKVPPRSAFKNAVFSAKLRDRIDLEKLQRYLAGNGYTRAQTVREPGEFA 172
             I+L      + ++PP S      FS    +R+D  KL+  L   GY     V  PGE+ 
Sbjct: 115  -ILLVPATTALYRMPPASFLAAYTFSFSQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYC 173

Query: 173  VRGGIVDLFPPGTEEPLRLDLFGDELEGVRAFDPMTQRTTDKRDSVELKPMSEVFLDDAG 232
            VRG ++DL+P G+  P R+DLF D+++ +RAFDP TQR+      V L P  E   D+A 
Sbjct: 174  VRGSLLDLYPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVKDVRLLPGREFPFDEAA 233

Query: 233  IARFRSGYRELFGAVTDDDPLYEAISAGRSYGGMEHWLPLFHESMDTVLDYLPRGIVSLD 292
               FRS +RE F        +Y+ I  G    G+E++LPLF +   T+  YLP+G     
Sbjct: 234  RTAFRSRWRETFEGDPSRASIYKDIGNGVPSAGIEYYLPLFFDDTATLFHYLPQG----- 288

Query: 293  HQANEARDARIAQVVDFHAS--RDGMMTIEKR------AGSPVYKPVPVASMFLDGIGWD 344
                    A++A + D  A+  R G  T ++          P+ +P     +FL     D
Sbjct: 289  --------AQLAFIGDLDAAIRRFGNDTKQRYNFLSHDRDRPILEP---QRLFLSDE--D 335

Query: 345  ALLAERAVAQLQIFSTPPGIKGTVDAGGKRGHDFAEERNRPDVNVFDAVKDHIRALRA-- 402
                 +  A+L +           +AGG            P++ +    +D + ALR   
Sbjct: 336  FFTLAKPFARLVL---------PANAGGGWSTPL------PNLAIDRHAEDPVSALRTYL 380

Query: 403  --DGRRVLIAGYSAGSRDRLSNVLADHGIPGLEPA--ESMEDVRRFDRGI-IGTIVLGME 457
                 RVL A  SAG R+ L  +LAD+    L+PA  +S +D    D    +G   L   
Sbjct: 381  DTTPNRVLFAAESAGRRETLLQLLADNH---LKPASSDSFQDWLTGDAPFSLGVAPLANG 437

Query: 458  HGFTSADLAVITEQDILGDRLVRPAKKKRKAAN----FIAEHSALHEGDIVVHMDHGIGR 513
                   +A+ITE ++ G    R  +++++ A+     + + S L  GD VVH  HGIGR
Sbjct: 438  FAVPVDGIAIITETELYGPLARRAGRRRQEQASNVDSMVRDLSELKVGDPVVHSQHGIGR 497

Query: 514  YDGLETLDVTGAPHDCLRLIYEGGDKLYVPVENIEVLSRY-GSEDANVQLDKLGGAGWQG 572
            Y GL T+D+     + L L Y G  KLYVPV  + V+SRY G++  +  L  LG   W+ 
Sbjct: 498  YMGLVTMDLGEGETEFLHLEYAGDSKLYVPVAQLHVISRYSGADPESAPLHSLGSGQWEK 557

Query: 573  RKARVKKRLKDMAEALLKIAAERMLKKADPVLTPEGVYQEFAARFPYPETDDQLKAIEDI 632
             K +  ++++D A  LL + A R  +           Y +FA  F + ET DQ  AI  +
Sbjct: 558  AKRKAAQQIRDTAAELLNLYARRAARSGHAFALEPKDYVKFAESFGFEETPDQAAAIAAV 617

Query: 633  FTDLGSGRPMDRLVCGDVGFGKTEVALRAAFMVAMSGKQVAVVVPTTLLARQHFRTFSTR 692
              D+ SG+PMDRLVCGDVGFGKTEVALRAAF+  M GKQVA++ PTTLLA QH +TF+ R
Sbjct: 618  IGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHTQTFTDR 677

Query: 693  FNGLPVRVVQLSRMVTAREQTLVKKELAEGTADIVVGTHALLAKGLDFKRLGMVIVDEEQ 752
            F+  PVR+ +LSR  + +E     +++ EG+ DIV+GTH LL+  + FKRLG+VI+DEE 
Sbjct: 678  FSDWPVRIAELSRFKSTKEVNAAIQQINEGSVDIVIGTHKLLSSDVQFKRLGLVIIDEEH 737

Query: 753  HFGVKQKERLKELRADIHVLTLTATPIPRTLQMALSGVRELSLIATPPVDRLAVRTFVLP 812
             FGV+QKE LK LRA++ VLTLTATPIPRTL MAL G+R+ S+IAT P  RLA++TFV  
Sbjct: 738  RFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRR 797

Query: 813  YDPVVIREAILREHYRGGQSFYVCPRVEDLAKVAERVRELVPEVKIVTAHGQMPASELED 872
             +  VIREA+LRE  RGGQ +++   VE +    + +  LVPE +I  AHGQM   ELE 
Sbjct: 798  EEESVIREAMLRELKRGGQVYFLHNEVETIENRRQMLEALVPEARIAVAHGQMHERELER 857

Query: 873  VMTAFDEGKFEVLLATNIIESGLDIPNANTLIVHRADLFGLAQLYQIRGRVGRSKKRGYA 932
            VM  F   +  VLL T IIE+G+D+P+ANT+++HR+D FGLAQL+Q+RGRVGRS  + YA
Sbjct: 858  VMRDFVAQRANVLLCTTIIETGIDVPSANTILIHRSDKFGLAQLHQLRGRVGRSHHQAYA 917

Query: 933  YLTYAPNKPLSGTAQQRLHVIETLDSLGAGFQLASHDMDIRGAGNLLGEEQSGQVREVGV 992
            YL     + L+  AQ+RL  I+ ++ LG+GF LA HD++IRG G +LG++QSG++ E+G 
Sbjct: 918  YLLVHDPQGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGF 977

Query: 993  ELYQQMLEEAVASARASMQEGAVAAAAAQEWVPQINLGTPVLIPESYVPDLTVRLSLYRR 1052
            +LY  ML +AV + +   +    A  AA     +INL  P ++P  Y  D+  RLSLY+R
Sbjct: 978  QLYTDMLNDAVKALKDGKEPDLTAPLAA---TTEINLHAPAILPADYCGDVQERLSLYKR 1034

Query: 1053 IADLVDRAEVDGFAAELIDRFGKLPEEVENLLDVVTIKRWCKQANIDRVDAGPKGLVLAF 1112
            +A+      +DG   ELIDRFGKLP +   L++   ++   K   I ++DAG   + L F
Sbjct: 1035 LANCEHSDAIDGIQEELIDRFGKLPPQAHALVETHRLRLAAKPLGISKIDAGEAVIGLQF 1094

Query: 1113 HDNFYAEPAKLLTYIAQHLTLMKLRPDHKLVYIREWPDPAARVRSVQKLVKDLAEMASG 1171
              N   +  +++  + +H  + KL    KL      PD A RV +V++ ++ L   + G
Sbjct: 1095 IPNPPIDAMRIIEMVQKHKHI-KLAGQDKLRIETRSPDFAVRVATVKETLRALGSPSRG 1152