Pairwise Alignments

Query, 358 a.a., Flagellar biosynthetic protein FlhB from Azospirillum sp. SherDot2

Subject, 346 a.a., type III secretion protein, YscU/HrpY family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  177 bits (449), Expect = 4e-49
 Identities = 112/348 (32%), Positives = 189/348 (54%), Gaps = 4/348 (1%)

Query: 8   SSKTEDPTGKKLDEAHKQGQFAMTREAANWLMVAAMLVVLVSILPGTMKGLVFRLNYYFE 67
           S KTE PT K+L EA ++G    +++  + L V A+   L +I  G +   +  +     
Sbjct: 2   SDKTEQPTPKRLREAREKGDICKSQDVGSALTVLAVGAYL-AIKGGDIFAEIMAVTELSM 60

Query: 68  NLDRITFDRAGVGALLFRVMSDAMWALWLPIL-LFVVAGVMSTIGQTGFHISWELISPKF 126
               + FD+A    LL   ++     + LP++ L +  G+++ + QTG   + +   PK 
Sbjct: 61  RQMSLPFDQAL--PLLATAVTRGAIGIVLPVVGLAMCVGLLANLAQTGVLFALKAAMPKL 118

Query: 127 GKLNPLPGLMNMFKANQGVELLKSIVKLGVVGGVAYMALVPMFGGIEAYIGIDIVAMLLQ 186
             ++P      +F     VE+LK+ +K+ V+G   +  L     G+ A     I  +L  
Sbjct: 119 ENMSPGKWFKKVFSVRNAVEMLKNCIKVAVLGWAVWKVLSDHMRGLFAIPDGGIGGLLTV 178

Query: 187 MDGLAHRLLVWVLVVLTFIAAGDFLWQKQQFDKKMKMTKQEVKDEHKQQEGDPVVKGRIR 246
           +   A  +++    V   IAA D+++Q+ Q++K+  MTK EVK E+K+ EGDP +KG+ +
Sbjct: 179 LGITARDMVLTSAAVFCVIAALDYMYQRWQYNKQHMMTKDEVKREYKEMEGDPHIKGKRK 238

Query: 247 QIRFERARKRMMAAVPNADVVVTNPTHFAVALKYDPTQMGAPMVLAKGVDQVAFKIREIA 306
           Q+  E   +  ++ V  A V+VTNPTH+AVAL Y+  +   P++LAKG   +A ++ EIA
Sbjct: 239 QLHQEMITQNTLSNVRKAKVIVTNPTHYAVALDYEKDRTPLPVILAKGEGLLAKRMVEIA 298

Query: 307 ESNNVPVIENPPLARALYAACDIDAEVPSEHYRAVAEVITYVFKLKGR 354
               +PV++N PLAR+L+A    +A +P +    VAEV+ +V  L+GR
Sbjct: 299 REEGIPVMQNVPLARSLFAEGTENAYIPKDLIGPVAEVLRWVQSLQGR 346