Pairwise Alignments

Query, 442 a.a., 47 kDa outer membrane protein from Azospirillum sp. SherDot2

Subject, 437 a.a., long-chain fatty acid transport protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  205 bits (521), Expect = 3e-57
 Identities = 146/458 (31%), Positives = 232/458 (50%), Gaps = 42/458 (9%)

Query: 6   LKTRLLTAAAAITVTAATASTA---FAAGFALKEQSVSGQGTAYAGVTAGGNGDASSMFY 62
           ++ RLLT A    VTAA  ST     AAGF L E S +G G A+AG  A  + +AS+ F 
Sbjct: 1   MQKRLLTLA----VTAALLSTTTQVHAAGFQLAEYSATGLGRAFAGEAAMAD-NASAQFR 55

Query: 63  NPATMGLVTGIEAVQTATGVIVKSKVDSASANRARRLGGTSIGGNASPG----DIAQDAL 118
           NPA +  +TG +   T   ++V   +D         + G    GN +      D+A +A+
Sbjct: 56  NPAMLTYLTGTQ--MTTGAILVMPNID---------VEGEVTVGNVTQATAAKDMAGNAV 104

Query: 119 VPAGYFVYSIDDDLKVGISANGPWGLVTDYGDSWIGRYHGIRSDLRTYNFAPSVSYRINP 178
           +P  Y  + ++    +G++    +G+ T+  D ++G   G  + ++     P+V+YRIN 
Sbjct: 105 IPNFYVSHQLNQQWFIGVALGTNFGMATELDDDFLGSQFGNEASIKAIEINPNVAYRINE 164

Query: 179 MITLGGGVQIQYAKAKLSQSSDFGASRLGRPGSLDVKSDVT-----GDDWGWGFTLGALI 233
            +++GGGV++   +  +   S   A      G+L V    T     GDD  WG+ LG   
Sbjct: 165 QLSVGGGVRLVLGEGSIGAKSSADAVLPTPIGNLPVPKGTTLKYMEGDDISWGWQLGGAW 224

Query: 234 EPVKGTRVGLAYRSAVKHTLTGSISFTGLPAPLAGALPAQ--SASADLTTPDIASIGLYH 291
           +     R+GL YRSAV   L G  +      PLA   P Q  + S +L+ P    +  +H
Sbjct: 225 QINADHRIGLNYRSAVDQRLEGEANGLAFN-PLA---PNQKLAGSMELSLPATVELASFH 280

Query: 292 EVNDRWAVMADVQWTNWSRFRELRVNIANPALNS--VTEEHWKDTWYYALGTSYKVTDKL 349
           ++  + AV A V WT+WS F +L   I +  + +  V +E+W+D++ +ALG +Y++ D+ 
Sbjct: 281 QLTPQLAVHASVNWTDWSSFEKLEAVIPSLKVPTQLVKQENWEDSYRFALGATYRLDDQS 340

Query: 350 TLRAGVAFDQGSVDVEYRTPRIPEQNRYWLSAGAGYQVTDNLRVDAAYSHVFIPKTSV-- 407
           +LRAGVA+D  +V    RT  IPE NR WLSAG GYQ +  L +D   +++   ++ V  
Sbjct: 341 SLRAGVAYDMSAVSDANRTLTIPEMNRVWLSAGYGYQFSKQLDLDFGVTYIIADESPVVE 400

Query: 408 ---ALTDDLTGPEAGRGNLNVDYKSSIDLIGLQAKFTF 442
               +  D +    G G  +     +I L G+QA + F
Sbjct: 401 PRPGIDSDNSAALFG-GTFSGTTSGNILLFGVQASYRF 437