Pairwise Alignments

Query, 259 a.a., Ribosomal RNA small subunit methyltransferase E from Azospirillum sp. SherDot2

Subject, 244 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Rhodanobacter denitrificans MT42

 Score =  111 bits (278), Expect = 1e-29
 Identities = 85/245 (34%), Positives = 127/245 (51%), Gaps = 16/245 (6%)

Query: 8   RLYVDSPLAEGQSVGLDHERAHFLRHVLRLDRGDSVAVFNGRDGEWRAVIDGFGKGWCSL 67
           R++VD PL       L  + A  +  VLR++ GD + +FNG   ++ AVI   GK   ++
Sbjct: 5   RIHVDQPLVVCAEPNLPPQAAEHVGRVLRMNPGDPLTLFNGDGHDYAAVILTVGKREVAV 64

Query: 68  TVAEQRREQDTTP-DLWLVFAPLKKGRIDFVAEKATEMGVSRLWPVFTRRTDPNRVNLDR 126
            V  ++  ++ +P  L L     +  ++D + +KATE+GV+R+ P+ T R++   V LD 
Sbjct: 65  RVESKQALRNESPLPLTLAQGVARGEKMDLIVQKATELGVARIVPLLTERSE---VRLDA 121

Query: 127 LRAN---------AVEAAEQCERLSVPEMGEAVPLDRALAGWPADRRLYLCAEAGAARPV 177
            RA             A EQ  R  +PE+  A+PL   L     D  L L     A R  
Sbjct: 122 ARAEKRLAHWRAVVASACEQSGRARLPEVTPALPLAAWLGSLADDGTLRLALLPEADRSP 181

Query: 178 AEVLRDAPPGPAALLVGPEGGFDQSELDELAKLPFVVPVGLGPRILRADTAVVAALACWQ 237
            + L+  P G   L+VGPEGG  + ++D L+   F   + LGPRILR +TA +AALA  Q
Sbjct: 182 RQ-LQFGPAG-GLLVVGPEGGLGERDVDALSAAGF-EGLRLGPRILRTETAGLAALAALQ 238

Query: 238 SLAGD 242
           +L GD
Sbjct: 239 ALHGD 243