Pairwise Alignments
Query, 638 a.a., Sensor histidine kinase RcsC from Azospirillum sp. SherDot2
Subject, 1763 a.a., sensory box histidine kinase/response regulator (RefSeq) from Shewanella amazonensis SB2B
Score = 180 bits (457), Expect = 4e-49
Identities = 165/554 (29%), Positives = 256/554 (46%), Gaps = 42/554 (7%)
Query: 86 FRFRHADGGWRWLEVTTR---NELADPAIGGLVLNIRDISDHIALSERLRASEARYRTLA 142
+R RH DG RW+ + +E +P LN DI++ ER+ S + T+
Sbjct: 722 YRIRHRDGSLRWVHEKGKASYDEDGNPVWFDGSLN--DITESKLAQERIEQSREQLETIT 779
Query: 143 EAVPVGILQ----ADSAGQVQFANARLAGITGLEPDRLLGRGWLDA--VHPEDRERVAAD 196
E+VP + Q ++ + F ++ G + +L L A + EDR +
Sbjct: 780 ESVPSTVYQLVWRSERDRRFTFLSSAAMATLGFHRNEVLDNFELVAERIVEEDRGEIIQM 839
Query: 197 WRLDSGCDAAATDFRFHDPDGT----GADRRVLCQRIRLEDGGTIATITDVSEYVLTANA 252
G FR+H P G A R Q+ L G + D+S
Sbjct: 840 LAGRHGMQWTKA-FRYHFPSGELRWLEAGARGSKQQDALVWNGYLM---DISGRKRMETE 895
Query: 253 LRLSEARNEAVLDTAADAILTVDEAGVLLSFNRAAEAMFGVAAGDLLWRPLDRLIPLADL 312
L SEA A+ D A I+ +D+ G++ N + G+++ L + L L+ D
Sbjct: 896 LAQSEAHFRALFDNAGIGIVNLDDRGIIKDCNGQFVSDLGISSDSLKRKQLADLMHPEDR 955
Query: 313 REEGGIRLEFAPGQTTALVARDRAAEAERADGIRFPVELSVSASEVE----GRRVYTAIL 368
G+ A + ++ + E DG + ++V AS +E G R +
Sbjct: 956 ALATGLYQALAESEQGSI-----SGEWRMLDGDGELMWMAVIASVLEEGDGGERSVVMSI 1010
Query: 369 RDVTERRRAEAELLAAKEAAEAGNQAKSTFIATMSHELRTPLNAVIGFSQL-LETQAGTA 427
++T + EL+AAKE A+A NQAKS F+A MSHE+RTP+NA+IG SQL L+T+
Sbjct: 1011 ANITRLKLLSDELMAAKEDADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTELDR- 1069
Query: 428 VAGGRQNDLVTDCVGAIRQAGEQLLAIIDDILDMARVDAGGFSLVEGSVNLSALIERVVA 487
+Q + V I +A + LL II+DILD ++++AG + L ++E +
Sbjct: 1070 ----KQRNYVE----KIERASKSLLGIINDILDFSKIEAGKLDIEVVPFQLDTILEDLGD 1121
Query: 488 DLRFHAT-RQGVTVDVAADGDLPPIRGDDRRLGQALRNLLSNAIKFSHPGGAVSLSAGLA 546
A +Q + A G + GD RL Q L NL++NAIKF+ G + + LA
Sbjct: 1122 MFSVKAADKQLELLFSVAPGVPTHLEGDPLRLSQVLINLMNNAIKFTERGEVMLSISELA 1181
Query: 547 ADG---WVELTVRDRGVGMRQEDVAQALTPFGQIDQTVTRRHEGIGLGLPLALRLVEAHG 603
D ++ VRD G+G+ E A+ F Q D + TR++ G GLGL + +LVE G
Sbjct: 1182 RDEDQVQLKFAVRDSGIGLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMG 1241
Query: 604 GTLTLDSAPGQGCT 617
G + +DS G G T
Sbjct: 1242 GEIGVDSQFGNGST 1255
Score = 66.2 bits (160), Expect = 1e-14
Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 17/179 (9%)
Query: 213 HDPDGTGAD----RRVLCQRIRLEDGGTIATI----TDVSEYVLTANALRLSEARNEAVL 264
H + GAD R L + L+D G + ++ DV+E A A + AVL
Sbjct: 466 HQVEMAGADGSLRRLDLFMQPLLDDEGQLISVEMLFNDVTEQFSAA-------AWSNAVL 518
Query: 265 DTAADAILTVDEAGVLLSFNRAAEAMFGVAAGDLLWRPLDRLIPLADLREEGGIRLEFAP 324
+ A +A+L VDE+G L+ N + +FG + ++L +D LIP + G R F
Sbjct: 519 EAAPEAMLIVDESGQLVFSNSRCQELFGYSGEEMLNLNIDALIPENERHGHQGKRQLFIE 578
Query: 325 GQTTALVARDRAAEAERADGIRFPVE--LSVSASEVEGRRVYTAILRDVTERRRAEAEL 381
G ++A + A + G +FPV+ LS+ ++ G+R A +RD+TE+ E ++
Sbjct: 579 GGRDKVMANGKPLHALKCGGEQFPVQIGLSLLPADSRGQRQVAASIRDLTEQLAVERQI 637
Score = 62.8 bits (151), Expect = 1e-13
Identities = 56/218 (25%), Positives = 92/218 (42%), Gaps = 14/218 (6%)
Query: 63 VEEAQHRLQLRVNAPAGSSGRAVFRFRHADGGWRWLEVTTRNELADPAIGGLVLN--IRD 120
VEE + + + G FR+ G RWLE R A LV N + D
Sbjct: 829 VEEDRGEIIQMLAGRHGMQWTKAFRYHFPSGELRWLEAGARGSKQQDA---LVWNGYLMD 885
Query: 121 ISDHIALSERLRASEARYRTLAEAVPVGILQADSAGQVQFANARLAGITGLEPDRLLGRG 180
IS + L SEA +R L + +GI+ D G ++ N + G+ D L +
Sbjct: 886 ISGRKRMETELAQSEAHFRALFDNAGIGIVNLDDRGIIKDCNGQFVSDLGISSDSLKRKQ 945
Query: 181 WLDAVHPEDRERVAADWR--LDSGCDAAATDFRFHDPDGTGADRRVLCQRIRLEDGG--- 235
D +HPEDR ++ +S + + ++R D DG V+ + DGG
Sbjct: 946 LADLMHPEDRALATGLYQALAESEQGSISGEWRMLDGDGELMWMAVIASVLEEGDGGERS 1005
Query: 236 TIATITDVSEYVLTANALRL----SEARNEAVLDTAAD 269
+ +I +++ L ++ L ++A N+A D A+
Sbjct: 1006 VVMSIANITRLKLLSDELMAAKEDADAANQAKSDFLAN 1043
Score = 39.7 bits (91), Expect = 1e-06
Identities = 59/287 (20%), Positives = 117/287 (40%), Gaps = 35/287 (12%)
Query: 117 NIRDISDHIALSERLRASEARYRTLAEAVPVGILQADSAG--QVQFANARLAGITGLEPD 174
+IRD+++ +A+ ++R SE+R+R L +P + + G +++ + + +TG
Sbjct: 623 SIRDLTEQLAVERQIRESESRFRGLVSNIPGAVYRTRINGTWTMEYVSDNITELTGYPAW 682
Query: 175 RLL---GRGWLDAVHPEDRERVAADWRLDSGC----DAAATDFRFHDPDGTGADRRVLCQ 227
+ R + + ED ER A + SG A ++R DG+ +
Sbjct: 683 HFIESKKRSFGSLILDEDAERCDA---IISGALAEQHAFEVEYRIRHRDGSLRWVHEKGK 739
Query: 228 RIRLEDGGTI---ATITDVSEYVLTANALRLSEARNEAVLDTAADAILTV---DEAGVLL 281
EDG + ++ D++E L + S + E + ++ + + E
Sbjct: 740 ASYDEDGNPVWFDGSLNDITESKLAQERIEQSREQLETITESVPSTVYQLVWRSERDRRF 799
Query: 282 SF-NRAAEAMFGVAAGDLLWRPLDRLIPLADLREEGGIRLEFAPGQTTALVARDRAAEAE 340
+F + AA A G ++ LD +A+ +E G+ ++A +
Sbjct: 800 TFLSSAAMATLGFHRNEV----LDNFELVAER------IVEEDRGEIIQMLAGRHGMQWT 849
Query: 341 RADGIRFP------VELSVSASEVEGRRVYTAILRDVTERRRAEAEL 381
+A FP +E S+ + V+ L D++ R+R E EL
Sbjct: 850 KAFRYHFPSGELRWLEAGARGSKQQDALVWNGYLMDISGRKRMETEL 896
Score = 36.2 bits (82), Expect = 1e-05
Identities = 36/165 (21%), Positives = 74/165 (44%), Gaps = 9/165 (5%)
Query: 25 LSPDGRVRHIGDSAGDLLGYAPETLTGASLGEHIHPDDVEEAQHRLQLRVNAPAGSSGRA 84
++PDG + + +LG +PE L + + + Q+ + + +
Sbjct: 409 MTPDGNIDQVSAGVEKVLGISPEVLKRKY--QRLFSSNAINEQNWQFMEMALRGEAVPPH 466
Query: 85 VFRFRHADGGWRWLEVTTRNELADPAIGGLVLNIRDISDHIALSERLRASEARYRTLAEA 144
ADG R L++ + L D G ++++ + + + +E+ A+ A + EA
Sbjct: 467 QVEMAGADGSLRRLDLFMQPLLDDE---GQLISVEMLFNDV--TEQFSAA-AWSNAVLEA 520
Query: 145 VPVGILQADSAGQVQFANARLAGITGLEPDRLLGRGWLDAVHPED 189
P +L D +GQ+ F+N+R + G + +L +DA+ PE+
Sbjct: 521 APEAMLIVDESGQLVFSNSRCQELFGYSGEEMLNLN-IDALIPEN 564