Pairwise Alignments

Query, 638 a.a., Sensor histidine kinase RcsC from Azospirillum sp. SherDot2

Subject, 776 a.a., PAS-family hybrid histidine kinase/receiver protein from Caulobacter crescentus NA1000

 Score =  189 bits (479), Expect = 5e-52
 Identities = 180/634 (28%), Positives = 277/634 (43%), Gaps = 72/634 (11%)

Query: 29  GRVRHIGDSAGDLLGYAPETLTGASLGEHIHPDD---VEEAQHRLQLRVNAPAGSSGRAV 85
           G   ++  +   ++G+  E +  A      HPDD   V +  +R++      AG    +V
Sbjct: 37  GTDHYVSPAVERMMGWTAEEMLEAGFKAFYHPDDTPAVYDVYNRMR------AGVEHCSV 90

Query: 86  -FRFRHADGGWRWLE---VTTRNELADPAIGGLVLNIRDISDHIALS-------ERLRAS 134
            +R R  DG + WLE      R+E   P+   L+   RDI + + L        E +R +
Sbjct: 91  RYRGRRKDGRYVWLESHLTLVRDEAGAPS--ELIAVTRDIDERVQLEDEARHTREAMRET 148

Query: 135 EARYRTLAEAVPVGILQADSAGQVQFANARLAGITGLEPDRLLGRGW-LDAVHPEDRERV 193
           + R     +   V   + D      + + R   + G   D  +  G  L   HPEDR   
Sbjct: 149 QQRAMLAEQVAQVAFWRVDLITNEVYLSPRFRELYGWTQDEPISLGEVLSRFHPEDRPVA 208

Query: 194 AADWRLDSGCDAAATDFRFHDPDGTGADRRVLCQ----------RIRLEDGGT----IAT 239
            A           A   R  +P     DR +                 +D G       T
Sbjct: 209 RA---------RVAEHLRTGEPSRNRMDRIIRLDGAVRHIVGSFEFDFDDNGRPIAMSGT 259

Query: 240 ITDVSEYVLTANALRLSEARNEAVLDTAADAILTVDEAGVLLSFNRAAEAMFGVAAGDLL 299
             DV++ V    +L  +E+R + +     D ++ VD  G +L  + A E + G A G+LL
Sbjct: 260 TVDVTDLVAAQQSLAKTESRFQDLAKATRDIVIEVDRRGNILFVSAAVEPVLGYAEGELL 319

Query: 300 WRPLDRLI---PLADLREEGGIRLEFAPGQTTALVARDRAAEAERADGIRFPVELSVSAS 356
            R   +L     L  L +  G  L    G    L AR    +         PV L+ +A 
Sbjct: 320 GRKAAKLTHPNDLPGLVQAFGAVLADPEGLPPVLEARALHKDGHWVWLQGRPV-LNRTAG 378

Query: 357 EVEGRRVYTAILRDVTERRRAEAELLAAKEAAEAGNQAKSTFIATMSHELRTPLNAVIGF 416
            +EG      +++D+TE +RA  EL A +  AE   +A+S F+A MSHELRTPL AVIGF
Sbjct: 379 RIEG------VIQDITEYKRARDELAAEQARAEQALEARSAFLANMSHELRTPLTAVIGF 432

Query: 417 SQLLETQAGTAVAGGRQNDLVTDCVGAIRQAGEQLLAIIDDILDMARVDAGGFSLVEGSV 476
           + L+E             +   D VG I  AG+ LL++I+D+L+M++++ G         
Sbjct: 433 AALVEGLDDLP-------ETARDYVGRISTAGKALLSVINDVLEMSKLETGQVQAHLAPC 485

Query: 477 NLSALIERVVADLRFHATRQGVTVDVAADGDLPP--IRGDDRRLGQALRNLLSNAIKFSH 534
            L+ LI+  V     HA  + + + V    D PP  +  D  R+ Q L NL+ NAI+++ 
Sbjct: 486 ALAPLIDDTVRMFGLHAAEKNLQIAVRM-VDPPPRVLMIDPDRVRQVLINLIGNAIRYTD 544

Query: 535 PGGAVSLSAGLAADGWVE---LTVRDRGVGMRQEDVAQALTPFGQIDQTVTRRHEGIGLG 591
            G   S++  +   G +E   + V+D G+G+   D A     F QI+    R   G GLG
Sbjct: 545 AG---SITLEVIWRGELEELFVAVKDTGIGIDPADQAHLFKRFSQIESARARSRGGSGLG 601

Query: 592 LPLALRLVEAHGGTLTLDSAPGQGCTATIRLPPS 625
           L ++  LVEA GG +   S PG+G T    +P S
Sbjct: 602 LVISKGLVEAMGGRIGASSKPGEGSTFWFAIPAS 635



 Score = 44.7 bits (104), Expect = 2e-08
 Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 3/137 (2%)

Query: 8   ELRIGGLFQDRRELVAVLSPDGRVRHIGDSAGDLLGYAPETLTGASLGEHIHPDDVEEAQ 67
           E R   L +  R++V  +   G +  +  +   +LGYA   L G    +  HP+D+    
Sbjct: 277 ESRFQDLAKATRDIVIEVDRRGNILFVSAAVEPVLGYAEGELLGRKAAKLTHPNDLPGLV 336

Query: 68  HRLQLRVNAPAGSSGRAVFRFRHADGGWRWLEVTTRNELADPAIGGLVLNIRDISDHIAL 127
                 +  P G       R  H DG W WL+      + +   G +   I+DI+++   
Sbjct: 337 QAFGAVLADPEGLPPVLEARALHKDGHWVWLQ---GRPVLNRTAGRIEGVIQDITEYKRA 393

Query: 128 SERLRASEARYRTLAEA 144
            + L A +AR     EA
Sbjct: 394 RDELAAEQARAEQALEA 410



 Score = 33.9 bits (76), Expect = 3e-05
 Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 7/155 (4%)

Query: 129 ERLRASEARYRTLAEAVPVGILQADSAGQVQFANARLAGITGLEPDRLLGRGWLDAVHPE 188
           + LRASEA +R L E     I +   +G   + +  +  + G   + +L  G+    HP+
Sbjct: 10  DALRASEAFFRLLTEQAGDVISRHRLSGTDHYVSPAVERMMGWTAEEMLEAGFKAFYHPD 69

Query: 189 DRERVAADW-RLDSGCDAAATDFRFHDPDGTGADRRVLCQRIRLEDGG---TIATITDVS 244
           D   V   + R+ +G +  +  +R    DG           +R E G     IA   D+ 
Sbjct: 70  DTPAVYDVYNRMRAGVEHCSVRYRGRRKDGRYVWLESHLTLVRDEAGAPSELIAVTRDID 129

Query: 245 EYVLTANALRLSEARNEAVLDTAADAILTVDEAGV 279
           E V   +  R +    EA+ +T   A+L    A V
Sbjct: 130 ERVQLEDEARHT---REAMRETQQRAMLAEQVAQV 161



 Score = 27.3 bits (59), Expect = 0.003
 Identities = 39/156 (25%), Positives = 56/156 (35%), Gaps = 28/156 (17%)

Query: 251 NALRLSEARNEAVLDTAADAILTVDEAGVLLSFNRAAEAMFGVAAGDLLWRPLDRLIPLA 310
           +ALR SEA    + + A D I     +G     + A E M G  A ++L           
Sbjct: 10  DALRASEAFFRLLTEQAGDVISRHRLSGTDHYVSPAVERMMGWTAEEML----------- 58

Query: 311 DLREEGGIRLEFAPGQTTA---LVARDRAA--------EAERADG--IRFPVELSVSASE 357
               E G +  + P  T A   +  R RA            R DG  +     L++   E
Sbjct: 59  ----EAGFKAFYHPDDTPAVYDVYNRMRAGVEHCSVRYRGRRKDGRYVWLESHLTLVRDE 114

Query: 358 VEGRRVYTAILRDVTERRRAEAELLAAKEAAEAGNQ 393
                   A+ RD+ ER + E E    +EA     Q
Sbjct: 115 AGAPSELIAVTRDIDERVQLEDEARHTREAMRETQQ 150