Pairwise Alignments

Query, 301 a.a., ECF RNA polymerase sigma factor SigJ from Azospirillum sp. SherDot2

Subject, 182 a.a., RNA polymerase subunit sigma-70 from Pseudomonas fluorescens FW300-N2E3

 Score = 41.2 bits (95), Expect = 2e-08
 Identities = 44/152 (28%), Positives = 65/152 (42%), Gaps = 5/152 (3%)

Query: 11  LAAFAGERARLRALAYRLLGSVAEAEDTLQDAWLRWSAVAPGSVGSAPA---YLTTLVTR 67
           L AF   R  L  +A R+ G  + AED +QDA+ R  + AP    S  A   YL  +V  
Sbjct: 15  LQAFVNNRLILVKIAARITGCRSRAEDVVQDAFFRLQS-APQITSSFKAQLSYLFQIVRN 73

Query: 68  LALDRLRSARVARERYYGLWLPEPEVAGWDSAPEDGMEPESVPLAMLLLLERLAPDQRAV 127
           LA+D  R  +   ++Y G       V   D++PE      S+   +   L +L    R  
Sbjct: 74  LAIDHYR-RQALEQKYSGTEEEGLNVVIHDASPETSHINFSILENIADALGQLPSRTRYA 132

Query: 128 FVLREAMDLDYAEIAAMLGKSVEACRQIMRRA 159
           F +     +   +IA  LG S      ++R A
Sbjct: 133 FEMYRLHGVPQKDIAKELGVSPTLVNFMIRDA 164