Pairwise Alignments

Query, 301 a.a., ECF RNA polymerase sigma factor SigJ from Azospirillum sp. SherDot2

Subject, 285 a.a., RNA polymerase sigma factor SigJ from Sinorhizobium meliloti 1021

 Score =  157 bits (398), Expect = 2e-43
 Identities = 109/304 (35%), Positives = 157/304 (51%), Gaps = 26/304 (8%)

Query: 1   MTALADPDTALAAFAGERARLRALAYRLLGSVAEAEDTLQDAWLRWSAVAPGSVGSAPAY 60
           MT     D A A+F   R +L  +AYR+LGSVA+AED +Q+A++RW       V    A+
Sbjct: 1   MTQATQADAA-ASFDPLRPKLMRVAYRMLGSVADAEDMVQEAFIRWMGADRAEVREPEAF 59

Query: 61  LTTLVTRLALDRLRSARVARERYYGLWLPEPEVAGWDSAPEDGMEPESVPLAMLLLLERL 120
           L   VTRL LD+L+SAR  RE Y G WLP+P V        +  E E V L ++L LERL
Sbjct: 60  LRRTVTRLCLDQLKSARRQRETYVGPWLPDPVV--------EEEEVEDVTLPLMLALERL 111

Query: 121 APDQRAVFVLREAMDLDYAEIAAMLGKSVEACRQIMRRARARLAEPAAWGQPANAADAGR 180
           +P +RA F+L +   L + E+AA + +   ACRQ+  RAR  + E  A  +     + G 
Sbjct: 112 SPLERAAFLLHDVFGLGFEEVAATIQRDAAACRQLAARARTHVRE--ARPRFHVEKERGL 169

Query: 181 RLADAFAEASVRRDYAAIVALLSDDAQWLSDGGGMVRTAVNPLFGADRIARF---LIGVQ 237
            LA+AF +AS   D  A  A+L+ D    +DGGG    A+ P+ G D + +    L  + 
Sbjct: 170 ELAEAFFKASRSGDMNAFGAMLAADVSIHADGGGKRSAAIMPIIGFDAVMKVHEKLAALF 229

Query: 238 RKRG---VSFGFIPVRVNGGPGLLADLGGAFRSVLAFDMAPCGDTGNRILRVYQIANPEK 294
           R  G   +  GF    VNG PG +           A ++      G ++  +Y + NP+K
Sbjct: 230 RANGSKLLRVGF----VNGLPGFITMEADGEIQTTALEI-----EGGKVAAIYVVRNPDK 280

Query: 295 LERV 298
           L  +
Sbjct: 281 LRHL 284