Pairwise Alignments

Query, 751 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 1181 a.a., type VI secretion system membrane subunit TssM from Vibrio cholerae E7946 ATCC 55056

 Score =  171 bits (434), Expect = 2e-46
 Identities = 150/549 (27%), Positives = 236/549 (42%), Gaps = 54/549 (9%)

Query: 121 RRDPELKASLEEIGTVRKQLDAALAQLRTRRG---GRYLYQLPWYLVIGAPGSGKTTALA 177
           +R+ +L+    ++   R++++     L  ++      YLY LPWYLV+G   +GKT+ + 
Sbjct: 87  KREEQLRQDPIKVYEQRQEVELNQVMLNMKQSLNKHNYLYALPWYLVLGLENAGKTSLIN 146

Query: 178 NTG--LAALSPGGKAAQPAAGPFIGLGGTRNCDWWFTDRAVLIDTAGRYTTQDSRR---- 231
            +G      S    + Q +  P+       + DWW  D +VLID  G   TQ +R     
Sbjct: 147 RSGQNFVFSSVMRASGQKSENPY-------SFDWWIGDESVLIDPDGELLTQGNRSEEND 199

Query: 232 -AVDGRVWSGLLDLLKEHRPRQPANGVLLTVSIPELTGWTDAERRNHAILIRQRLNELRV 290
            A++ R+W   +D L   R R+P NG++L + +  L   T +ER+ +A L+R RL EL  
Sbjct: 200 GALERRLWLHFVDWLDRTRSRRPLNGIVLALDVAHLATATASERKAYANLLRARLRELME 259

Query: 291 QLGVRLPVYLLLTKADLLDGFATFFDPLDREARGQVWGLTLPAEEPASDTSAPGSSAGPL 350
            L  RLPVY+ LTK DLL GF  FF    +  R +V G T   +   +  S        L
Sbjct: 260 TLSTRLPVYIALTKLDLLHGFEPFFKHYTKSQREEVLGFTFSMDSVDNLDSW-------L 312

Query: 351 PVFRALYAGLVRRLDERLLDRLHQEPDIRRRSDAFALPLRVAELEPALADIVDTAFGSEH 410
             F + Y   V R++  L   +     +  R+  ++   +++ L+  L      A  S+ 
Sbjct: 313 EEFASEYTQFVSRVNGMLPHAVAAPMTLEERNAIYSFTRQISGLKEILQQFFQEALASDQ 372

Query: 411 GEEAPRLRGLYLTSATQTDASLALFHPDSGPEGGPGGGHETGGPA---STYFLERLLPDV 467
              +  +RG Y TS  Q       F   +    G      T   A   + YF ++L   +
Sbjct: 373 FSTSALVRGAYFTSVYQQGVPTNAFDDAASRRYGLSHAINTAQRAKNSTVYFTQKLFTHI 432

Query: 468 VFPEANLARVDRRVERARRRRALLSAAAALALALAVGGWWLVSARGNAALLERADAGAAA 527
           ++PEA LA  + RV + +RR   LS  A     L + G W  +   N   ++ AD     
Sbjct: 433 IYPEAGLASDNFRVAKNKRRLMGLSFVACSVATLLLAGTWHRNYLNN---VQHADTVLTK 489

Query: 528 VEAALRPLDTAPRSLVRVDDADPAAILPALEALRALPFAFDDAQDGAGRMWAGEMWTARI 587
           V        T+ RSL     A    +L  L  +R     F   +D     +  +      
Sbjct: 490 VNQYKEQFPTS-RSL-----ASQREVLDPLNKIREATLEFGFFRDKP--QYISDF----- 536

Query: 588 WAGPALAGGLYQGGRIAVPAQEAYRRALRTQFLARIALRLEERLRADWALPDQLR-QTLR 646
                   GLYQG  I    +E Y   L T+FL    L  +  +  + A  D+ +   LR
Sbjct: 537 --------GLYQGHTIGPKVEETYLNLLETRFLP--LLMADTIVALNQAETDEEKLAVLR 586

Query: 647 VYRMITGRT 655
           VYRM+  ++
Sbjct: 587 VYRMLVDKS 595