Pairwise Alignments

Query, 399 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 90.5 bits (223), Expect = 7e-23
 Identities = 78/318 (24%), Positives = 134/318 (42%), Gaps = 44/318 (13%)

Query: 39  AAAAAGVASVGPFVLREGHAASGSVKIFSWAGYISPDMLADFEKKTGVKATLTEYGTNDE 98
           A   AG A     +     A    +   +W  YI+  +L  F K+TG+K   + Y +N+ 
Sbjct: 5   ATLLAGSACALSLLSGTAAAEDKELVFMNWGPYINSGILEQFTKETGIKVIYSTYESNET 64

Query: 99  LLNQLKATGGAGFDIIHPTVDRVPNYVEFELVQPIDEAKVK-------------WDGCLK 145
           L  +LK T   G+D++ P+   V    +  ++Q ID++K+              +D    
Sbjct: 65  LYAKLK-THNQGYDLVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSNYLDKPYDPNND 123

Query: 146 SSVEGSAGMGGVVGAKRYFAPADWGTEALAYDMKKAPLAYGTASYGDLWAPANAGKVTVR 205
            S+     + G+      + P D+                   S+GDLW P   G++ + 
Sbjct: 124 YSIPHVVAITGLAVNTDMYDPNDF------------------QSWGDLWKPELKGQLMLM 165

Query: 206 GHSSLIGIALWLESQGKLPHPVRDQFKDEAKARANFDAILKVAAANKKSVAQFWTNENEA 265
             +  +   + L   G   +   D+  DEA A       L+    N   V  F  N +  
Sbjct: 166 DDTREV-FHIALRKLGYSGNSTDDKQIDEAYAE------LQKLMPN---VLVF--NSDNP 213

Query: 266 QGAFRTNGCVIGQTWDSSAVALRKEGLPVRFVAPKEGALAWMEGFAIPKKAENLENAYAW 325
              + +    +G  W+ SA A +KEGLP++ V PKEG + W++ FAI   A+N++ A+  
Sbjct: 214 AAPYLSGEVGLGMLWNGSAAAAQKEGLPIKLVFPKEGGIGWVDNFAISSGAKNVDAAHKM 273

Query: 326 INWFYTPEAGALYTNHSG 343
           I++   PE     +  +G
Sbjct: 274 IDFLLRPEIAEQISRDTG 291