Pairwise Alignments

Query, 288 a.a., hypothetical protein from Alteromonas macleodii MIT1002

Subject, 326 a.a., putative integrase from Pseudomonas fluorescens FW300-N2E2

 Score = 52.4 bits (124), Expect = 1e-11
 Identities = 55/178 (30%), Positives = 79/178 (44%), Gaps = 21/178 (11%)

Query: 125 KSDLIKLSLRLQQEFGLRKEECMKFSLSYAMKDVQTM-RIK---GTWAKGGKYREIP--- 177
           K D +   + L +E G+R  E +   L    ++ + + RI    GT  KGG+        
Sbjct: 152 KYDRVAAIVLLARETGMRLREAILADLPRLQREAKNLGRINIQDGT--KGGRSGASAPRW 209

Query: 178 -ILKESQK---QLIRDIAAVTKGALIEPDRKYVDQMRQY---DRETIRVGLNKN-HGLRH 229
            +  E  K   Q  R+ +      L+  D  Y   ++Q     RET+     K  H LR 
Sbjct: 210 VVANEEVKTALQFARNASPPGSRDLLARDESYAAFLKQTVLPARETLHEQELKGFHELRA 269

Query: 230 HYARERYLELTGWKCPADGGPSRRELSPNDYEKDTKAREQISRELGHERLKITYAYLG 287
            Y  ERY +LTG   P +GG         D   D +AR+QIS ELGH R+ +  AY+G
Sbjct: 270 AYTCERYEQLTGHAAPINGGRCYHI----DRALDQQARQQISLELGHNRVDVVSAYIG 323