Pairwise Alignments

Query, 612 a.a., Autotransporter assembly factor TamA from Alteromonas macleodii MIT1002

Subject, 582 a.a., outer membrane protein assembly factor from Vibrio cholerae E7946 ATCC 55056

 Score =  294 bits (753), Expect = 6e-84
 Identities = 184/566 (32%), Positives = 299/566 (52%), Gaps = 33/566 (5%)

Query: 56  IQGVEDDKLRNNIRLHLNSLDVEKSLLTDPYWQDEVGETVATAVQPYGYYNSETKVSIEE 115
           I G E D    N+  +L+S+  +    T   +Q ++  ++  A+   GYY+     ++ E
Sbjct: 41  ISGAEKD----NVEAYLSSIAAQ-DYSTSLRFQSQLERSMTEALNALGYYHPSIDFTVSE 95

Query: 116 GDKVTVNVALNAPLTINKVTR------EIIGAGREDKAFRERFNSLKLKEGDVLNQTIYE 169
                 N  L A +T+ +VTR       I G    D+ F+       L+    LN ++Y+
Sbjct: 96  D-----NQRLRAAVTLGEVTRLSEVDIVIRGEAEGDRDFQRLIRRSGLRVDAPLNHSLYD 150

Query: 170 SFKSSMFNYALSNGYFDYFWQATRLDLVRDEKQANVLLIAQSGPQYQFGELKFIGDDKAK 229
           + KS + N AL  GYF+  +QA+RL+++ +  QA V+L   SG +Y FG     G    +
Sbjct: 151 NLKSGIRNLALQKGYFNGDFQASRLEVIPELNQARVILHFDSGIRYLFGATTVEGSQIDE 210

Query: 230 AIIERLKPFKTGDAYSSATLADFNRSLNQSGYFTRVIARPVVSEAD-GLLVPVEVSLLHR 288
             +  L+PFK G+ Y  + + +FN++L+ + +F+ V   P +S+ D G  +P++V+L  +
Sbjct: 211 NRVMSLRPFKQGEPYLVSQVGEFNQNLSNTDWFSSVFVEPDLSQLDEGRELPIKVTLAPQ 270

Query: 289 PTDAFNVSVGAATDTGPRVRLGWERPWVNSKGHSVSSDIFISAPEQSVTADYRIPMRNIT 348
             +     +G +TD G R  L W++PWVNS+GHS  S   +S PEQ++TA Y+IP+ +  
Sbjct: 271 ARNQLETGLGYSTDVGVRGSLKWKKPWVNSQGHSFDSSFSLSIPEQTITAGYKIPLEDAL 330

Query: 349 RDYASIEAGYQFIEYSNTSFESETLSLSAHRYWQHDNSPWQHDGSVTYLRETYDQGELST 408
            +Y  I+ G + ++  +T  ES   +LS  R+WQ D   W     + YL E Y QG L  
Sbjct: 331 NEYYRIQYGMKHLDKRDT--ESLESNLSLERHWQLDGG-WHRTVFIRYLLENYRQG-LQD 386

Query: 409 NTTSLVLPGYSLT-YRDKDSELNINNGTYLQMLTQIGREGYGSDIDFAKAVVEATLIRTF 467
           + +  +LPG + T  R + +   +  G    +  + G     S+    +    ++ +RT+
Sbjct: 387 DNSQFLLPGMTYTRTRTRSNSGLLTWGDKQTITLEYGDPALLSETRVLRLQTGSSWLRTY 446

Query: 468 NNVHRITIRGEAGVIKTNSFDEVPTSLRFYAGGDKSVRGFDYREISPTAEVIDPETGELI 527
              HR  +R + G    + FD++  SLRF+AGGD ++RG+ Y+ ISP        +G L 
Sbjct: 447 ARNHRALVRVDGGANLVDEFDQLSPSLRFFAGGDNNLRGYGYKSISP-----QDASGAL- 500

Query: 528 VDSIGGKYLATSSVEYAYQVADNWRVAAFVDAGTATNDTSTTLTYSVGPGVHWLSPIGPV 587
               G KY+ATSS+EY Y++  NW  A F+D G A ND +      VG G+ W+SP+GP+
Sbjct: 501 ---TGAKYIATSSIEYQYRLTGNWWAAMFMDVGDAFND-NPEWKKGVGTGIRWISPVGPI 556

Query: 588 RLYVARGF-APDENTWQLHILLGPEL 612
           RL  A G  A   + +++H  LGPEL
Sbjct: 557 RLDFAWGLDAAPGDEFKIHFTLGPEL 582