Pairwise Alignments

Query, 400 a.a., Na(+)-translocating NADH-quinone reductase subunit B from Alteromonas macleodii MIT1002

Subject, 415 a.a., NADH:ubiquinone reductase (Na(+)-transporting) subunit B from Vibrio cholerae E7946 ATCC 55056

 Score =  556 bits (1432), Expect = e-163
 Identities = 281/413 (68%), Positives = 323/413 (78%), Gaps = 13/413 (3%)

Query: 1   MGLKAYLEKIEPNFEPGGKHEKWYALYEAAATIFYTPGKVNKANTHVRDSIDLKRIMIMV 60
           MGLK +LE IE +FEPGGKHEKW+ALYEAAAT+FYTPG V K ++HVRDS+DLKRIMIMV
Sbjct: 1   MGLKKFLEDIEHHFEPGGKHEKWFALYEAAATLFYTPGLVTKRSSHVRDSVDLKRIMIMV 60

Query: 61  WMATFPAMFFGMYNIGFQAQEAIA---AG---AGTLPDTWQAGLFAALGGDLAN-AGTLG 113
           W+A FPAMF+GMYN G QA  A+    +G   A  +   W   L   LGG +++ AG   
Sbjct: 61  WLAVFPAMFWGMYNAGGQAIAALNHLYSGDQLAAIVAGNWHYWLTEMLGGTMSSDAGWGS 120

Query: 114 LFFYGACFWLPIYAVTFAVGGFWEVLFASVRKHEVNEGFFVTSVLFALTLPATIPLWQVA 173
               GA ++LPIYA  F VGGFWEVLF  VRKHEVNEGFFVTS+LFAL +P T+PLWQ A
Sbjct: 121 KMLLGATYFLPIYATVFIVGGFWEVLFCMVRKHEVNEGFFVTSILFALIVPPTLPLWQAA 180

Query: 174 LGITFGVVIAKEVFGGTGRNFLNPALSGRAFLYFAYPAQISGDQVWVAADGYSGATSLSQ 233
           LGITFGVV+AKEVFGGTGRNFLNPAL+GRAFL+FAYPAQISGD VW AADGYSGAT+LSQ
Sbjct: 181 LGITFGVVVAKEVFGGTGRNFLNPALAGRAFLFFAYPAQISGDLVWTAADGYSGATALSQ 240

Query: 234 AASG------NLDYANMDQWMNSFIGTISGSAGEVSTLAIILGGLFIMYMRIASWRIVAG 287
            A G      N        WM++FIG I GS GEVSTLA+++G  FI+YM IASWRI+ G
Sbjct: 241 WAQGGAGALINNATGQTITWMDAFIGNIPGSIGEVSTLALMIGAAFIVYMGIASWRIIGG 300

Query: 288 VAIGVAFFATLLNLIGSDTNPMFAMPAHWHFVVGGLAFGMFFMATDPVSASFTNQGKWAY 347
           V IG+   +TL N+IGSDTN MF MP HWH V+GG AFGMFFMATDPVSASFTN GKWAY
Sbjct: 301 VMIGMILLSTLFNVIGSDTNAMFNMPWHWHLVLGGFAFGMFFMATDPVSASFTNSGKWAY 360

Query: 348 GIFIGFMTVLIRVLNPAFPEGVMLAILFANLWAPLFDYFVAQSNIKRRVARVG 400
           GI IG M VLIRV+NPA+PEG+MLAILFANL+APLFD+ V + NIKRR+AR G
Sbjct: 361 GILIGVMCVLIRVVNPAYPEGMMLAILFANLFAPLFDHVVVERNIKRRLARYG 413