Pairwise Alignments

Query, 357 a.a., DNA polymerase IV from Alteromonas macleodii MIT1002

Subject, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

 Score =  374 bits (961), Expect = e-108
 Identities = 196/351 (55%), Positives = 250/351 (71%), Gaps = 5/351 (1%)

Query: 1   MRKIIHVDMDCFYAAVEMRDNPALRDIPIAIGGSADRRGVISTCNYPARKFGVRSAMATA 60
           +RKIIHVDMDCF+AAVEMRDNPA R+I +A+GG   +RGVISTCNY ARKFGVRSAM TA
Sbjct: 5   IRKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTA 64

Query: 61  YALKLCPNLTLVKGRMDVYATESQKIRKIFADYTDLIEPLSLDEAYLDVTNSEFCGGSAT 120
            ALKLCP L +V GRM VY + SQ+I+ IF  YT LIEPLSLDEAYLDV+ S    GSAT
Sbjct: 65  QALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGSAT 124

Query: 121 LIAEEIRERIKNELGLTASAGVAPCKFVAKVASDENKPDGICVITPDKLDEFVREMPLKK 180
           LIA+ IR  I  EL LTASAGVAP KF+AKVASD NKPDG+ V+TPDK+ E V  +PL+K
Sbjct: 125 LIAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEK 184

Query: 181 IPGVGKVTMQKLQRMGLNTCDDVRQYPFERIQKELGKFGSVLWERAHGIDERELSVSRER 240
           IPGVGKV ++KL + GL    DVR+  + ++  + G+ G+ LW+++HGIDERE+   RER
Sbjct: 185 IPGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERER 244

Query: 241 KSIGVERTLSEDIHTFEQCIDFLPH-LFEKLQERMENHKKRTGKPVRIRTQGVKLKFNDF 299
           KS+GVE T S++I TF++C   +   L+ +L  R+     + G    I  QG+K+KF DF
Sbjct: 245 KSVGVEYTFSQNISTFQECWQVIEQKLYPELDARLSRAHPQRG----IIKQGIKVKFADF 300

Query: 300 QLTTVEHRCATLDEAYFRTLMQEAFERATGRGIRLVGVHIGLAADQSTQQL 350
           Q TT+EH    L+  YF  L+++   R  GR IRL+G+ + L  +   +QL
Sbjct: 301 QQTTIEHVHPALELDYFHELLEQVLTRQQGREIRLLGLSVMLKPELQMKQL 351