Pairwise Alignments

Query, 706 a.a., Bacteriophytochrome cph2 from Alteromonas macleodii MIT1002

Subject, 890 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  294 bits (752), Expect = 1e-83
 Identities = 181/536 (33%), Positives = 302/536 (56%), Gaps = 9/536 (1%)

Query: 164 QQAIHNLETGVVILDDKGGLILDNKASHRLLLCNSTTPSSIRVNEL--LTDIDAPATFLP 221
           Q+A+    +  +++D  G +   N A   +   ++      R+ +L  L ++        
Sbjct: 342 QRAVEQSASAFILVDRDGRVEYVNPAFTSISQFSAAEVRGHRLTDLKALENLSELLFDTS 401

Query: 222 ALVQRKAPWQGELYWQPVDDYGVWLQVTIHPVLQGDE-LTHWVYLLTDITHIHNKEESVL 280
           +++     WQGE   +  +    W Q++I  V   +  LTH++ +  DIT      + + 
Sbjct: 402 SVLAHSNSWQGEFRSRRKNLEPYWGQLSISKVFNDEGVLTHYIGIYEDITRSKLAHQHIE 461

Query: 281 TASGMDSLTKVANRNLFTDTV--RRLVQEEIAFKLFIIDICDFKKINESLSYQSGDEILK 338
             +  D+LT + NR  F  ++  R     E    L ++DI +FK+IN+SL +Q+GD++L 
Sbjct: 462 RLAYTDNLTNLGNRPYFIRSLEERFAAGAEPRLCLLLVDIDNFKRINDSLGHQTGDKLLT 521

Query: 339 SFALRLQTFVGNSGFIARIGSNEFALVKREDTFNELTSAEYMEQLVKKLTQTYTVLNGSE 398
           S A RL+  +     +AR  SNEFAL+  +   +E       +Q+++ L +   V +   
Sbjct: 522 SLARRLRNGLSQQSVLARFASNEFALLFDDMELDE--GLRLADQVLRVLDKPLFV-DKQL 578

Query: 399 PNLGINIGEANFPRHCPSTESLLQCADIALQAAKYQGRNVALTYSEALHKQHHAINELES 458
            ++  ++G A  P+H    E+L++ A  AL  AK  G+N    ++EALH + +    +E+
Sbjct: 579 ISVSASLGLACSPQHGRDPETLMKHAGQALHKAKANGKNQVQIFTEALHAEANYKLFVEN 638

Query: 459 QLRSAIENNELKLFLQPIVDLETGKIVKCEALARWITSEGKFISPEVFIPLAEKSELIFP 518
            LR A+  NEL++F QP + L +G++   EAL RW   E   I P+ FI +AE++ LI P
Sbjct: 639 NLRRALTQNELEVFYQPKLCLRSGQLQGLEALLRWNHPEKGMIRPDQFISVAEETGLIIP 698

Query: 519 FGEWLINAACDAIEALKA-SNLDIRLAINISGRQVSDLALLNQIKNALEDHQIPGSNLSI 577
            G+W++  AC     L A  +   ++AIN+S +Q SD  LL  I + L + Q+    L +
Sbjct: 699 IGKWVLREACRMGVRLSALGHGKPQIAINLSPKQFSDPDLLGSIASILLEEQLSPGQLEL 758

Query: 578 ELTESVFVESLDTVSVLLNELRAMGITVSIDDFGTGFSSLVYLKKLPIDELKIDRSFVSE 637
           ELTES+ +++ +     L  L+A+G+T+++DDFGTG+SSL YLKK PID +KIDRSF+ +
Sbjct: 759 ELTESLLLDATEETRQQLIGLKALGLTLAMDDFGTGYSSLSYLKKFPIDVIKIDRSFIKD 818

Query: 638 LEKNTDDQAIVQAILGLASNLNIKIIAEGIETQQQQQFLQNHRCAYGQGYLYQRPV 693
           +  N DD  I  A++ +A  L++K++AEGIET +Q +FL++HRC  GQGYL+ +P+
Sbjct: 819 IPDNQDDMEITSAVIAMARKLHLKVVAEGIETAEQLKFLRHHRCDIGQGYLFDKPI 874