Pairwise Alignments

Query, 706 a.a., Bacteriophytochrome cph2 from Alteromonas macleodii MIT1002

Subject, 998 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  267 bits (682), Expect = 2e-75
 Identities = 173/541 (31%), Positives = 289/541 (53%), Gaps = 15/541 (2%)

Query: 169 NLETGVVILDDKGGLILDNKASHRLLLCNSTTPSSIRVNELLTDIDAPATF--LPALVQR 226
           N    + +LD+ G +I  N A   +   + +      +  +  D++    +  +   ++ 
Sbjct: 455 NSSEAMSVLDENGVIITVNAAFTDITGYSESEIRGQHIRMMYCDLNGHEFYQQMNDDIRN 514

Query: 227 KAPWQGELYWQPV--DDYGVWLQVTIHPVLQGDELTHW-VYLLTDITHIHNKEESVLTAS 283
           K  WQGE+  +    ++Y +WL  TI+ +   D L H  V L +DIT     E  +   +
Sbjct: 515 KGEWQGEMRQRRRNNEEYVIWL--TINTIKDKDGLPHRRVALFSDITDKKQSEHLIWKQA 572

Query: 284 GMDSLTKVANRNLFTD----TVRRLVQEEIAFKLFIIDICDFKKINESLSYQSGDEILKS 339
             D+LT + NR +  +     ++   +    F L  +D+  FK++N++L +  GD +L  
Sbjct: 573 NYDTLTGLPNRRMLLEYLSAEIKTADRNRNHFALMFLDLDYFKEVNDTLGHAMGDLLLIE 632

Query: 340 FALRLQTFVGNSGFIARIGSNEFALVKREDTFNELTSAEYMEQLVKKLTQTYTVLNGSEP 399
            A RL++ V ++  +AR+G +EF +V      +        E +++++ + Y  L     
Sbjct: 633 TASRLKSCVRDADVVARLGGDEFTVVL-SSMADHKGIERVAEHILRRIAEPY-YLGEETT 690

Query: 400 NLGINIGEANFPRHCPSTESLLQCADIALQAAKYQGRNVALTYSEALHKQHHAINELESQ 459
           ++  +IG   +P   PS E LL+ AD A+ AAK QGRN    ++ ++ +       L   
Sbjct: 691 HISASIGITLYPDDSPSIEGLLKHADQAMYAAKDQGRNRFNYFTPSMQEYAKYRMRLIHD 750

Query: 460 LRSAIENNELKLFLQPIVDLETGKIVKCEALARWITSEGKFISPEVFIPLAEKSELIFPF 519
           LR A+ N E +L  QPIV + TG+++K EAL RW   E   +SP  FIP+AE + LI   
Sbjct: 751 LRQAVLNKEFELHYQPIVTMATGEVLKAEALLRWFHPERGSVSPAEFIPVAEDTGLIVEI 810

Query: 520 GEWLIN-AACDAIEALKASNLDIRLAINISGRQVSDL-ALLNQIKNALEDHQIPGSNLSI 577
           G W+   AA  + +  K   ++I++++N S  Q  D  ALL+     L+   + G+ + +
Sbjct: 811 GNWVFEQAARQSAQWRKTLGVEIQISVNKSPIQFRDEGALLHNWLELLQQLDVTGAGVCV 870

Query: 578 ELTESVFVESLDTVSVLLNELRAMGITVSIDDFGTGFSSLVYLKKLPIDELKIDRSFVSE 637
           E+TE + +++   V+  L   R  G+ VS+DDFGTG+SSL YLKK  ID LKID+SF   
Sbjct: 871 EITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKFDIDYLKIDQSFTRN 930

Query: 638 LEKNTDDQAIVQAILGLASNLNIKIIAEGIETQQQQQFLQNHRCAYGQGYLYQRPVAIPE 697
           ++ + +D  + +AI+ +A  L +K+IAEG+ET+ Q+Q L    C YGQGYL+ +PV+  E
Sbjct: 931 IDTDENDHTLCEAIIVMAHKLGMKVIAEGVETEAQRQVLLRAGCDYGQGYLFSKPVSASE 990

Query: 698 F 698
           F
Sbjct: 991 F 991