Pairwise Alignments

Query, 388 a.a., site-specific tyrosine recombinase XerC from Alteromonas macleodii MIT1002

Subject, 324 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis S2

 Score = 45.8 bits (107), Expect = 2e-09
 Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 23/152 (15%)

Query: 226 ALLFKLLISTGLRCSELLSIKWSDIDFTASRFDVVILKQKCKFRGKAKTLPMLAETKSLL 285
           AL+ ++L  TG R SE LSI++ D DF   RF +   K       + +T+ +  ET  ++
Sbjct: 158 ALIVRVLWETGCRRSEALSIRYKDCDFEKGRFRIRDTKTY-----EERTVVIAEETVEIV 212

Query: 286 LALRPEIYSEEQTIY-----------QIKPQTLQSVFTRAATQAGISG-------LSLHD 327
                E    +   Y           ++K   + +VF +A  +    G       + +H 
Sbjct: 213 RDYIKENIKRDSNDYIFQNEMIQNGKRVKLDWITNVFKKAVRKLKEEGVIPEGKRIVIHS 272

Query: 328 LRTEAISRMLELGLPVPIVACFTGHRDHSTII 359
           LR    + +L+ G+P+ +V    GHR   T +
Sbjct: 273 LRHGRATDLLDKGVPIDVVKEILGHRSLETTL 304