Pairwise Alignments

Query, 849 a.a., Excinuclease ABC subunit A from Alteromonas macleodii MIT1002

Subject, 973 a.a., excinuclease ABC subunit A from Sinorhizobium meliloti 1021

 Score =  474 bits (1221), Expect = e-138
 Identities = 275/722 (38%), Positives = 402/722 (55%), Gaps = 62/722 (8%)

Query: 137 NTPEGACEHCDGIGKVFDTQAHRLVPDDSLTIREGAVAAWPGA---WQGKNLVRVLLSLD 193
           N P GAC  CDG+G         +VP+ + T+R+GA+A W  +   +  + L  +     
Sbjct: 292 NNPFGACTTCDGLGSQQKIDEALIVPEPNRTLRDGAIAPWAKSTSPYYNQTLEALGTVFG 351

Query: 194 IDVDIPWRELPQRTRDWILFTDEMPQLPVY----RNYNLAQTRKAQQEGEPASYNGKFIS 249
             +   W EL +  ++ IL   +      Y    R+YN  +T           + G   +
Sbjct: 352 FKLGSRWSELSEEAQEAILHGTKDKITFHYQDGARSYNTTKT-----------FEGIVPN 400

Query: 250 ARRHVLDTFKTSQKEKMKQRIAPFISVEACPVCRGKKLKQNALAVKVDGLDIIEFSRLPL 309
             R   +T     +E++++    ++S   CP C G +LK  ALAVK+  L I E S + +
Sbjct: 401 LERRWKETDSAWAREEIER----YMSAAPCPACAGYRLKPEALAVKIHALHIGEVSEMSI 456

Query: 310 QQVHEKLQALRKSVNGDTSERGQVIRNITGDLIERVKPIIALGLHYLSLDRSTTSISVGE 369
           +   +  + L + ++   +++ ++   I  ++ ER++ +  +GL YLSL R++ ++S GE
Sbjct: 457 RAARDWFEVLPEHLS---TKQNEIAVRILKEIRERLRFLNDVGLEYLSLSRNSGTLSGGE 513

Query: 370 LQRLRLATQLKSNLFGVVFVMDEPSSGLHPRDVEGLIRALHNITETGNSLLVVEHNPYVI 429
            QR+RLA+Q+ S L GV++V+DEPS GLH RD   L+  L ++ + GN+++VVEH+   I
Sbjct: 514 SQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARLLDTLRHLRDIGNTVIVVEHDEDAI 573

Query: 430 KGANWVVDVGPRAGVNGGELVYSGPVKELASTKNSLTADYVFNNKALS---QRIKCKSSG 486
             A++VVD+GP AG++GGE++  G   ++ S   SLT  Y+    +++   +R K K   
Sbjct: 574 LTADYVVDIGPAAGIHGGEVIAEGTPSDIMSNPKSLTGKYLSGELSVAVPGERRKPKKKK 633

Query: 487 VLRLKDVSRNNVSHVDIDIPLGVMTCVTGVSGSGKSSLISQALVELVKGGLNSAEKEGVR 546
            + +     NN+ +V   IPLGV T VTGVSG GKS+ + + L +       +    G R
Sbjct: 634 EVTVVGARANNLKNVTASIPLGVFTAVTGVSGGGKSTFLIETLYKAA-----ARRVMGAR 688

Query: 547 ANETRETEETKELLTDANSLLTNDTFSHKSEPQQGLIESGLEELSRIVVVDQSPIGRTPR 606
            N                             P +     G E + +++ +DQSPIGRTPR
Sbjct: 689 EN-----------------------------PAEHDRIDGFEHIDKVIDIDQSPIGRTPR 719

Query: 607 STLATYTGIFDQIRSLFASTEEAKSRGYDAGHFSFNVAKGRCSHCEGLGVVSVELLFMPS 666
           S  ATYTG F  IR  FA   EAK+RGY  G FSFNV  GRC  C+G GV+ +E+ F+P 
Sbjct: 720 SNPATYTGAFTPIRDWFAGLPEAKARGYQPGRFSFNVKGGRCEACQGDGVIKIEMHFLPD 779

Query: 667 VYSPCTVCNGQRFNDNVLEVGYNEHSIADVLSLTVEEALSVFSGNQVITRGLKTLMNVGL 726
           VY  C VC+G+R+N   L+V +   SIADVL +TVEE +  F+    +   L TL  VGL
Sbjct: 780 VYVTCDVCHGKRYNRETLDVHFKGKSIADVLDMTVEEGVEFFAAVPAVRDKLVTLNQVGL 839

Query: 727 GYLTLGQSATELSGGEAQRIKLASELKRAQNANTLYVLDEPTTGLHLSDTALLMQHLSTL 786
           GY+ +GQ A  LSGGEAQR+KLA EL +     TLY+LDEPTTGLH  D A L++ L  L
Sbjct: 840 GYIKIGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEPTTGLHFHDVAKLLEVLHEL 899

Query: 787 VEAGNTVVMVEHNMQVAGACDYIIDMGPGAGDEGGEIVAEGRPEEVAKVQRSATAPFLKA 846
           V  GN+VV++EHN++V    D+IID GP  GD GGE++A+G PEEV K  RS T  FLK 
Sbjct: 900 VNQGNSVVVIEHNLEVIKTADWIIDFGPEGGDGGGEVIAQGTPEEVVKEPRSYTGQFLKE 959

Query: 847 SL 848
            L
Sbjct: 960 LL 961



 Score =  137 bits (346), Expect = 2e-36
 Identities = 62/113 (54%), Positives = 90/113 (79%)

Query: 8   IHVRGARVHNLKNISIDIPRNEVVVFTGVSGSGKSSLAFGTLYAEAQHRYLDSISPYARR 67
           I +RGAR HNLK I +D+PRN+++V TG+SGSGKSSLAF T+YAE Q RY++S+S YAR+
Sbjct: 7   ISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 66

Query: 68  LIEQVEKPDVDAIDGLPPAVGLHQRRGAPSVRSSVGSITTLSNSLRMLYSRAG 120
            +E ++KPDVD IDGL PA+ + Q+  + + RS+VG++T + + LR+L++R G
Sbjct: 67  FLEMMQKPDVDQIDGLSPAISIEQKTTSRNPRSTVGTVTEIYDYLRLLFARVG 119



 Score =  125 bits (315), Expect = 9e-33
 Identities = 73/197 (37%), Positives = 106/197 (53%), Gaps = 17/197 (8%)

Query: 669 SPCTVCNGQRFNDNVLEVGYNEHSIADVLSLTVEEALSVFS---------GNQVITRGLK 719
           +PC  C G R     L V  +   I +V  +++  A   F           N++  R LK
Sbjct: 424 APCPACAGYRLKPEALAVKIHALHIGEVSEMSIRAARDWFEVLPEHLSTKQNEIAVRILK 483

Query: 720 T-------LMNVGLGYLTLGQSATELSGGEAQRIKLASELKRAQNANTLYVLDEPTTGLH 772
                   L +VGL YL+L +++  LSGGE+QRI+LAS++        LYVLDEP+ GLH
Sbjct: 484 EIRERLRFLNDVGLEYLSLSRNSGTLSGGESQRIRLASQIGSGLTG-VLYVLDEPSIGLH 542

Query: 773 LSDTALLMQHLSTLVEAGNTVVMVEHNMQVAGACDYIIDMGPGAGDEGGEIVAEGRPEEV 832
             D A L+  L  L + GNTV++VEH+       DY++D+GP AG  GGE++AEG P ++
Sbjct: 543 QRDNARLLDTLRHLRDIGNTVIVVEHDEDAILTADYVVDIGPAAGIHGGEVIAEGTPSDI 602

Query: 833 AKVQRSATAPFLKASLA 849
               +S T  +L   L+
Sbjct: 603 MSNPKSLTGKYLSGELS 619



 Score = 57.0 bits (136), Expect = 5e-12
 Identities = 50/163 (30%), Positives = 72/163 (44%), Gaps = 15/163 (9%)

Query: 7   KIHVRGARVHNLKNISIDIPRNEVVVFTGVSGSGKSSLAFGTLYAEAQHRYLDSISPYAR 66
           ++ V GAR +NLKN++  IP       TGVSG GKS+    TLY  A           AR
Sbjct: 634 EVTVVGARANNLKNVTASIPLGVFTAVTGVSGGGKSTFLIETLYKAA-----------AR 682

Query: 67  RLIEQVEKP-DVDAIDGLPPAVGLHQRRGAPSVRSSVGSITTLSNSLRMLYSRAGDYPKG 125
           R++   E P + D IDG      +     +P  R+   +  T + +   +       P+ 
Sbjct: 683 RVMGARENPAEHDRIDGFEHIDKVIDIDQSPIGRTPRSNPATYTGAFTPIRDWFAGLPEA 742

Query: 126 QSIVYADG-LSPNTPEGACEHCDGIGKVFDTQAHRLVPDDSLT 167
           ++  Y  G  S N   G CE C G G V   + H  +PD  +T
Sbjct: 743 KARGYQPGRFSFNVKGGRCEACQGDG-VIKIEMH-FLPDVYVT 783



 Score = 49.7 bits (117), Expect = 8e-10
 Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 27/137 (19%)

Query: 488 LRLKDVSRNNVSHVDIDIPLGVMTCVTGVSGSGKSSLISQALVELVKGGLNSAEKEGVRA 547
           + ++    +N+  +D+D+P   +  +TG+SGSGKSSL             ++   EG R 
Sbjct: 7   ISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSL-----------AFDTIYAEGQRR 55

Query: 548 NETRETEETKELLTDANSLLTNDTFSHKSEPQQGLIESGLEELSRIVVVDQSPIGRTPRS 607
                +   ++ L                E  Q      ++ LS  + ++Q    R PRS
Sbjct: 56  YVESLSAYARQFL----------------EMMQKPDVDQIDGLSPAISIEQKTTSRNPRS 99

Query: 608 TLATYTGIFDQIRSLFA 624
           T+ T T I+D +R LFA
Sbjct: 100 TVGTVTEIYDYLRLLFA 116