Pairwise Alignments

Query, 849 a.a., Excinuclease ABC subunit A from Alteromonas macleodii MIT1002

Subject, 951 a.a., excinuclease ABC subunit UvrA from Methanococcus maripaludis S2

 Score =  508 bits (1308), Expect = e-148
 Identities = 289/718 (40%), Positives = 422/718 (58%), Gaps = 42/718 (5%)

Query: 137 NTPEGACEHCDGIGKVFDTQAHRLVPDDSLTIREGAVAAWPG---AWQGKNLVRVLLSLD 193
           N+P GACE+C G+G   +  A  ++PD +  I +GAVA +      ++ ++L  V     
Sbjct: 269 NSPFGACEYCSGLGIKMEFDADLIIPDKNKCIADGAVALYRNFLDGYRSQHLAAVANHFG 328

Query: 194 IDVDIPWRELPQRTRDWILFTDEMPQLPVYRNYNLAQTRKAQQEGEPASYNGKFISARRH 253
             V  P ++L +   D +++       P   ++ ++      +  +   + G    + R 
Sbjct: 329 FTVLTPIKDLSKEQLDILMYGS-----PEKIHFKVSNGSGDTEWSQNKPWEGLIPQSIR- 382

Query: 254 VLDTFKTSQKEKMKQRIAPFISVEACPVCRGKKLKQNALAVKVDGLDIIEFSRLPLQQVH 313
               +  ++ E  ++ +  F+ V  CP C GK+LK  ALAVK++   II+ + L + +  
Sbjct: 383 ---LYNETKSEYRRKELEKFMKVSLCPKCGGKRLKDKALAVKIEDKSIIDLTDLSISKAE 439

Query: 314 EKLQALRKSVNGDTSERGQVIRNITGDLIERVKPIIALGLHYLSLDRSTTSISVGELQRL 373
           E    L+      T +  ++ + +  ++  R+K +  +GL YL+L R + ++S GE QR+
Sbjct: 440 EFFNNLKL-----TDKEYEIAKQVIKEIKSRLKFLNDVGLGYLTLSRRSGTLSGGEAQRI 494

Query: 374 RLATQLKSNLFGVVFVMDEPSSGLHPRDVEGLIRALHNITETGNSLLVVEHNPYVIKGAN 433
           RLATQ+ SNL GV++V+DEPS GLH RD + LI  LH +    N+L+VVEH+   I  A+
Sbjct: 495 RLATQIGSNLTGVLYVLDEPSIGLHQRDNQKLIETLHKLRNLDNTLVVVEHDEDTILNAD 554

Query: 434 WVVDVGPRAGVNGGELVYSGPVKELASTKNSLTADYVFNNKALS-QRIKCKSSGVLRLKD 492
           +VVD+GP AGV+GG++V  G   E++  K+SLT  Y+     +   + + KS   L+L +
Sbjct: 555 YVVDMGPGAGVHGGDVVAVGTPMEISKNKDSLTGKYLSGELKIEIPKNRRKSDKFLKLSN 614

Query: 493 VSRNNVSHVDIDIPLGVMTCVTGVSGSGKSSLISQALVELVKGGLNSAEKEGVRANETRE 552
             +NN+  V ++IP GV   +TGVSGSGKS+LI + L   +K  + S E  G    E + 
Sbjct: 615 CRQNNLKDVSVEIPTGVFNVITGVSGSGKSTLIYENLYPALKEKIKSDESVGELDFEDQL 674

Query: 553 TEETKELLT-DANSLLTNDTFSHKSEPQQGLIESGLEELSRIVVVDQSPIGRTPRSTLAT 611
            E TKE    + NS                       E+ ++VV+DQSPIGRTPRS  AT
Sbjct: 675 YENTKEKCNLEINS-----------------------EIDKVVVIDQSPIGRTPRSNPAT 711

Query: 612 YTGIFDQIRSLFASTEEAKSRGYDAGHFSFNVAKGRCSHCEGLGVVSVELLFMPSVYSPC 671
           YT +FD+IR +FA T+EAK +GY  G FSFNV  GRC +C+G GV+ +E+ F+P V+  C
Sbjct: 712 YTKVFDKIRQVFAETKEAKIKGYGPGRFSFNVKGGRCENCQGDGVIKIEMNFLPDVFVEC 771

Query: 672 TVCNGQRFNDNVLEVGYNEHSIADVLSLTVEEALSVFSGNQVITRGLKTLMNVGLGYLTL 731
             C G R+N   LEV Y   SI+DVL+++VEEA   F     I+  LKTL +VGLGY+ L
Sbjct: 772 EECKGARYNHETLEVKYKGKSISDVLNMSVEEAREHFKNIPQISNKLKTLCDVGLGYIKL 831

Query: 732 GQSATELSGGEAQRIKLASELKRAQNANTLYVLDEPTTGLHLSDTALLMQHLSTLVEAGN 791
           GQS+T LSGGEAQRIKL  EL +    NT+Y+LDEPTTGLH  D   L+  L++LVE GN
Sbjct: 832 GQSSTTLSGGEAQRIKLTRELSKRATGNTIYLLDEPTTGLHFHDVKKLIDVLNSLVEKGN 891

Query: 792 TVVMVEHNMQVAGACDYIIDMGPGAGDEGGEIVAEGRPEEVAKVQRSATAPFLKASLA 849
           TVV++EHN+ V    D+IID+GP  G+ GGEI+A G PEE+AK + S T  FLK  L+
Sbjct: 892 TVVVIEHNLDVIKCADHIIDLGPEGGEFGGEIIATGTPEEIAKCKLSHTGKFLKNILS 949



 Score =  132 bits (331), Expect = 1e-34
 Identities = 60/113 (53%), Positives = 89/113 (78%)

Query: 8   IHVRGARVHNLKNISIDIPRNEVVVFTGVSGSGKSSLAFGTLYAEAQHRYLDSISPYARR 67
           I ++GAR HNLKNIS+ +PRN ++V TGVSGSGKS++AF T+YAE Q RY++S+S YAR+
Sbjct: 4   IIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAYARQ 63

Query: 68  LIEQVEKPDVDAIDGLPPAVGLHQRRGAPSVRSSVGSITTLSNSLRMLYSRAG 120
            +  + KPDVD+I+GL PA+ + Q+  + + RS+VG++T + + LR+LY+R G
Sbjct: 64  FLGLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIG 116



 Score = 54.3 bits (129), Expect = 3e-11
 Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 11/152 (7%)

Query: 8   IHVRGARVHNLKNISIDIPRNEVVVFTGVSGSGKSSLAFGTLYAEAQHRYLDSIS----P 63
           + +   R +NLK++S++IP     V TGVSGSGKS+L +  LY   + +     S     
Sbjct: 610 LKLSNCRQNNLKDVSVEIPTGVFNVITGVSGSGKSTLIYENLYPALKEKIKSDESVGELD 669

Query: 64  YARRLIEQV-EKPDVDAIDGLPPAVGLHQRRGAPSVRSSVGSITTLSNSLRMLYSRAGDY 122
           +  +L E   EK +++    +   V + Q     + RS+  + T + + +R +++   + 
Sbjct: 670 FEDQLYENTKEKCNLEINSEIDKVVVIDQSPIGRTPRSNPATYTKVFDKIRQVFAETKEA 729

Query: 123 P-KGQSIVYADG-LSPNTPEGACEHCDGIGKV 152
             KG    Y  G  S N   G CE+C G G +
Sbjct: 730 KIKG----YGPGRFSFNVKGGRCENCQGDGVI 757



 Score = 45.1 bits (105), Expect = 2e-08
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 27/135 (20%)

Query: 490 LKDVSRNNVSHVDIDIPLGVMTCVTGVSGSGKSSLISQALVELVKGGLNSAEKEGVRANE 549
           +K    +N+ ++ + +P   +  VTGVSGSGKS++             ++   EG R   
Sbjct: 6   IKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTI-----------AFDTIYAEGQRRYV 54

Query: 550 TRETEETKELLTDANSLLTNDTFSHKSEPQQGLIESGLEELSRIVVVDQSPIGRTPRSTL 609
              +   ++ L   N            +P    IE     LS  + + Q    + PRST+
Sbjct: 55  ESLSAYARQFLGLMN------------KPDVDSIEG----LSPAIAIQQKTTSKNPRSTV 98

Query: 610 ATYTGIFDQIRSLFA 624
            T T I+D +R L+A
Sbjct: 99  GTVTEIYDYLRLLYA 113



 Score = 29.3 bits (64), Expect = 0.001
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 588 EELSRIVVVDQSPIGRTPRSTLATYTGIFDQIRSLFASTEEAKSRGYDAGH-----FSFN 642
           ++ SR+V   +  + R+    + T T   ++I  +++S       G          FSFN
Sbjct: 210 DDHSRLVEACERALERSGGLLIVTGTKNNEEIEKIYSSNLACPICGISFEELQPRMFSFN 269

Query: 643 VAKGRCSHCEGLGV 656
              G C +C GLG+
Sbjct: 270 SPFGACEYCSGLGI 283