Pairwise Alignments

Query, 280 a.a., Small-conductance mechanosensitive channel from Alteromonas macleodii MIT1002

Subject, 569 a.a., mechanosensitive ion channel protein MscS from Vibrio cholerae E7946 ATCC 55056

 Score =  212 bits (540), Expect = 1e-59
 Identities = 103/224 (45%), Positives = 146/224 (65%)

Query: 57  KYDNMLVDFLEAILSAILMLFVIVASLDQLGVDTTSLVAILGAAGLAIGLSLQDSLKNFA 116
           +  +++ DF  ++   ++ +  I+  L Q+G++   ++   G AG+ IG +LQD+L NFA
Sbjct: 336 RISHLMQDFFVSMSGKVVWVIGILVGLSQIGLNLAPVLTGFGIAGVIIGFALQDTLSNFA 395

Query: 117 AGVMLLVFKPFKAGDFVEAAGTAGSIVKIGIFTTTMNTPDNKEIIVPNGNIYGGNITNYS 176
           AG+MLL+++PF  GDFV A G  G +  + +  TT+ T DN+ IIVPN  I+G  I N +
Sbjct: 396 AGMMLLIYRPFDVGDFVHAGGVDGKVSHMSLVNTTIRTFDNQIIIVPNSKIWGDVIKNVT 455

Query: 177 ARDTRRVDMVVGIGYDADLLKAKRILEEMVAADERILAEPAPKIAVSELADSSVNFVVRP 236
               RRVDMV GIGY  DLLKA+ +L ++V +   +L  P P I V  L  SS++F+VRP
Sbjct: 456 HERIRRVDMVFGIGYSDDLLKAEAVLTDIVKSHPAVLKTPEPNIKVHTLNTSSIDFIVRP 515

Query: 237 WVNSADFWGVKFDFTENVKLRFDEEGISIPFPQMDVHLHKADSE 280
           WV + D+W V +D T+ VKLRFD EGISIPFPQ DVHLH  D +
Sbjct: 516 WVKTDDYWDVYWDVTKEVKLRFDREGISIPFPQQDVHLHLVDQK 559