Pairwise Alignments

Query, 341 a.a., HTH-type transcriptional repressor CytR from Alteromonas macleodii MIT1002

Subject, 332 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score = 98.6 bits (244), Expect = 2e-25
 Identities = 84/331 (25%), Positives = 154/331 (46%), Gaps = 38/331 (11%)

Query: 3   KTKLTLKDVAEQLGVSTATISNAFNRPDQLSKAKREEILAQCKKIGYSGPNKAAQILRKG 62
           K + TL+DVA+Q+GV+  T+S     PD ++ A RE+I    + +GY   N+A  +L K 
Sbjct: 4   KQRATLQDVADQVGVTKMTVSRYLRSPDSVAAATREKIALAVEALGYI-ENRAPAMLSKS 62

Query: 63  TSNIVALVLADSISYMVSDPVASTFIKGVSSALQENGKHLLL--YAGDSD----SILDVV 116
           +S  + ++L       +S+ + ++F++G+ +  + NG   LL  +  D +     I  ++
Sbjct: 63  SSKAIGILLPS-----LSNQIFASFVQGIEAVTKANGYETLLAHFGYDEEEEERKIASLL 117

Query: 117 DF-VDGFICYGQPRNSNLVAELAVSPKPVVTVDFDIEDKP---SINIDNEEAAYRVASHA 172
            + VDG I          +  +A S  PVV    ++   P   ++ +D+ EA+Y+     
Sbjct: 118 AYQVDGLILTESHHTQRTLQMIASSGVPVVET-MELPANPIDMAVGMDHVEASYQAVKKI 176

Query: 173 LNEGD-NVAIFGLRLIDSPSTCRIYDSPLIDVDSSIAHRRLDGYLRAAEEKNITVSNERI 231
           +  G  ++A FG RL               D  + +   R+ GY +A +E  + +  + +
Sbjct: 177 IAAGKRSIAYFGARL---------------DTRTKL---RMQGYDQAMQEAGLPI--KHV 216

Query: 232 WHLPESDRHFARQAAKEVLTSSPRPNVVLCMSDIIALELLHLALDMNIKVPEELKITGFD 291
                S    A Q   E     P  + V C +D IA+  L +A    I+VPE+L + G++
Sbjct: 217 LTGSHSSFSLAAQLLDEAFARYPDLDGVFCTNDDIAIGTLLVAQQRGIRVPEQLSVIGYN 276

Query: 292 GIGEAERARPRLTTVCQSSSGKGVEATKALL 322
            +       P+LT+V       G ++ + L+
Sbjct: 277 ALDIGRTITPKLTSVDSPRYAIGEKSAELLI 307