Pairwise Alignments

Query, 309 a.a., Chemotaxis protein MotB from Alteromonas macleodii MIT1002

Subject, 318 a.a., flagellar motor protein MotB from Vibrio cholerae E7946 ATCC 55056

 Score =  366 bits (939), Expect = e-106
 Identities = 183/309 (59%), Positives = 236/309 (76%), Gaps = 9/309 (2%)

Query: 3   EEECPKCPPEGLPAWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNK 62
           E++C KCPP GLPAW+GTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQN+
Sbjct: 4   EQQC-KCPPPGLPAWLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNR 62

Query: 63  IEVKDIPKGTSVIAMEFRPGKPDPTPIESIQQQTNEMTQQMLEFQAGNEDSAGGRQKQRG 122
           +EVKDIPKGTS+IA EFRPG+P+PTPI+ I QQT ++TQQ LEFQ G  D AGG Q+  G
Sbjct: 63  LEVKDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFQEGESDRAGGNQRDSG 122

Query: 123 EQRGGQSQQTATESSSSAEQSTDQSQ---MAELMKKVAQQLEK----QILDGSVEMESLG 175
           +  GGQS +T+ + + + +    Q Q   M+E M+ VA+ ++K    +I  G++E+E+LG
Sbjct: 123 QLTGGQSAETSVQDNQNTQSEMQQQQAQAMSEQMETVAESIKKALSREIEQGAIEVENLG 182

Query: 176 QQLTIRIRENGSFSAGSAFLQPQFQPVLRKIGTLLADVPGEIEISGHSDGQHIANELYRS 235
           QQ+ IRIRE G+F  GSAFLQP+F+P++R+I  L+ D+PG++ ++GH+D Q + +ELYRS
Sbjct: 183 QQIDIRIREKGAFPEGSAFLQPKFRPLVRQIAELVKDIPGKVRVTGHTDNQKLDSELYRS 242

Query: 236 NWDLSAQRAVAVAEAMRTAPGFDESRMSVVGKADTDPIVENATSPSDRAQNRRVEININQ 295
           NWDLSAQRAV+VA+ M     FD  R+ V G ADT P+  N T  + RA NRRVEI+I Q
Sbjct: 243 NWDLSAQRAVSVAQEMEKVKDFDHLRLQVRGLADTQPLGPNDTE-AQRATNRRVEISILQ 301

Query: 296 GKPMLSKPI 304
           G P+ S  +
Sbjct: 302 GDPVYSDEV 310