Pairwise Alignments

Query, 309 a.a., Chemotaxis protein MotB from Alteromonas macleodii MIT1002

Subject, 335 a.a., flagellar motor protein MotD from Rhodanobacter denitrificans MT42

 Score = 93.2 bits (230), Expect = 8e-24
 Identities = 78/283 (27%), Positives = 124/283 (43%), Gaps = 27/283 (9%)

Query: 16  AWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNKIEVKDIPKGTSVI 75
           AW   +ADLM+LL+ FFV++ + S ++  KF+ ++ S+  AF   +   +  +P      
Sbjct: 14  AWAIPYADLMTLLLAFFVVMYAVSVVNEGKFRVMSESLIEAFNGSSH-AIAPLP------ 66

Query: 76  AMEFRPGKPDPTPIESIQQQTNEMTQQMLEFQAGNEDSAGGRQKQRGEQRGGQSQQTATE 135
               RP    P       Q  + +    +        ++GG  ++ G             
Sbjct: 67  PTRIRPHNVAPAIAAPAGQSGSSIVPIAVPIPPHPVPASGGSGREAG------------- 113

Query: 136 SSSSAEQSTDQSQMAELMKKVAQQLEKQILDGSVEMESLGQQLTIRIRENGSFSAGSAFL 195
                 QS  Q  +  +  +V + L+  I    V +      L I IR +  F +G A L
Sbjct: 114 -----HQSKPQETLGRIEDQVRKALQPLIDRKLVVVRHKPDWLEIEIRTDILFPSGVAQL 168

Query: 196 QPQFQPVLRKIGTLLADVPGEIEISGHSDGQHIANELYRSNWDLSAQRAVAVAEAMRTAP 255
                 VLR +  +LA     + + G +D + I+N LY SNW+LSA RA  VA    T  
Sbjct: 169 SEPATAVLRDLAAILARFGNPLRVEGFTDDKPISNTLYPSNWELSAARAARVARLFST-N 227

Query: 256 GFDESRMSVVGKADTDPIVENATSPSDRAQNRRVEININQGKP 298
           G   +R+ ++G  +T PI +NAT    R QNRRV + +    P
Sbjct: 228 GIAPARLGIIGWGETRPIADNATE-EGRNQNRRVLVVVMSDHP 269