Pairwise Alignments

Query, 478 a.a., Na(+)/dicarboxylate symporter from Alteromonas macleodii MIT1002

Subject, 478 a.a., transporter from Vibrio cholerae E7946 ATCC 55056

 Score =  178 bits (451), Expect = 4e-49
 Identities = 139/439 (31%), Positives = 217/439 (49%), Gaps = 55/439 (12%)

Query: 51  AITLFVAVLWVTEALPIPATSLLPFAL-------------------FPLFGVLSHSEAAS 91
           AI L  A+LWV E +P+ ATS+L  AL                    PL  +L +++  S
Sbjct: 51  AIFLLAALLWVLEPVPVFATSILIIALELVMISDKGLHGFRVPDPHHPLGELLKYTDIFS 110

Query: 92  ALGSHVIILLMAAFMLSKGLERANLHKRFAIYMLRITGSGSPLKLVLGFMLTTAVLSMWI 151
           A  S +IIL M  F L+    +  L    A  +L+  G   P  ++LG ML T+V SM++
Sbjct: 111 AFSSPIIILFMGGFALAIAASKYELDNNLARVLLKPFGH-QPKYIMLGLMLITSVFSMFM 169

Query: 152 SNTATILMMLPMAIAIINAVDNPRFGV-ALILGIAYSASLGGVGTPIGTPPNIIFMSVYE 210
           SNTAT +MML +   I+ +      G+ AL+L I  +A+ GG+ TPIGTPPN I +    
Sbjct: 170 SNTATTVMMLALLGPIVASAPKGDLGIKALVLCIPIAANTGGIATPIGTPPNAIALQYLT 229

Query: 211 ETQGIEYSFIDWMKTGVPIVILGVPIMALWLARGI-KQVGNIDLPVPGTWTKAEKRVLAI 269
               I+  F+ WM  G+P V++ + I    L +        + L + G + +  + +L +
Sbjct: 230 GENSID--FLSWMMMGLPFVLVQLTIAWFLLQKLFPSSQATMTLKLKGEFQRGWRAML-V 286

Query: 270 FGTVALAWIFRPFW--TAWIGISTISDSTIAVAGVAAMFFTNSGNDNGEVDEKGNNDKLL 327
           + T AL  +    W  T+W G++T       VA +    FT +G              ++
Sbjct: 287 YITFALTIVL---WMTTSWHGMNTY-----VVAIIPLAVFTLTG--------------IM 324

Query: 328 DWKTANDIPWGMLLLFAGGICIAKAFMSSGLSVLMGTWLTGLSTLPVLLLVLGICLFVTF 387
             +    I W +L L AGGI I      +GL+  +   +   S  P +L+V+ + L    
Sbjct: 325 GKEELKQINWDVLWLVAGGIAIGIGLEQTGLAQALAHSIDYQSLSP-MLIVIALSLVCWL 383

Query: 388 LTEITSNTATSTLLMPILAAAGMAVGVDPKL-----LMIPAAISASCAFMLPVATAPNAI 442
           +    SNTAT+ L+MPI AA G ++    ++     L++  A SAS   +LPV+T PN++
Sbjct: 384 MANFMSNTATANLIMPIAAAIGTSMSSLEQVGGLQALLVVVAFSASLGMILPVSTPPNSL 443

Query: 443 AYSTEKFDIKTMAREGVVL 461
           AYST   + K MA+ G+V+
Sbjct: 444 AYSTGLIESKDMAKTGLVI 462



 Score = 63.5 bits (153), Expect = 1e-14
 Identities = 59/200 (29%), Positives = 106/200 (53%), Gaps = 19/200 (9%)

Query: 46  IIFTAAITLFVAVLWVTEA---LPIPATSLLPFALFPLFGVLSHSEAASALGSHVIILLM 102
           +  T A+T+   VLW+T +   +     +++P A+F L G++   E    +   V+ L+ 
Sbjct: 286 VYITFALTI---VLWMTTSWHGMNTYVVAIIPLAVFTLTGIMG-KEELKQINWDVLWLVA 341

Query: 103 AAFMLSKGLERANLHKRFAIYMLRITGSGSPLKLVLGFMLTTAVLSMWISNTATILMMLP 162
               +  GLE+  L +  A  +     S SP+ +V+   L   +++ ++SNTAT  +++P
Sbjct: 342 GGIAIGIGLEQTGLAQALAHSI--DYQSLSPMLIVIALSLVCWLMANFMSNTATANLIMP 399

Query: 163 MAIAI---INAVDNPRFGVALILGIAYSASLGGVGTPIGTPPNIIFMSVYEETQGIEYSF 219
           +A AI   +++++      AL++ +A+SASLG +  P+ TPPN    S+   T  IE   
Sbjct: 400 IAAAIGTSMSSLEQVGGLQALLVVVAFSASLGMI-LPVSTPPN----SLAYSTGLIESK- 453

Query: 220 IDWMKTGVPIVILGVPIMAL 239
            D  KTG+ I  +G+ I+ L
Sbjct: 454 -DMAKTGLVIGGIGLGIVYL 472



 Score = 49.3 bits (116), Expect = 3e-10
 Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 20/193 (10%)

Query: 260 TKAEKRVLAIFGTVALAWIFRPFWTAWIGISTISDSTIAVAGVAAMFFTNSGNDNGEVDE 319
           T  + R+LAIF   AL W+  P          +  ++I +  +  +  ++ G     V +
Sbjct: 43  TLVQHRLLAIFLLAALLWVLEPV--------PVFATSILIIALELVMISDKGLHGFRVPD 94

Query: 320 K----GNNDKLLDWKTANDIPWGMLLLFAGGICIAKAFMSSGLSVLMGTWLTGLSTLPVL 375
                G   K  D  +A   P  +++LF GG  +A A     L   +   L         
Sbjct: 95  PHHPLGELLKYTDIFSAFSSP--IIILFMGGFALAIAASKYELDNNLARVLLKPFGHQPK 152

Query: 376 LLVLGICLFVTFLTEITSNTATSTLLM----PILAAAGMA-VGVDPKLLMIPAAISASCA 430
            ++LG+ L  +  +   SNTAT+ +++    PI+A+A    +G+   +L IP A +    
Sbjct: 153 YIMLGLMLITSVFSMFMSNTATTVMMLALLGPIVASAPKGDLGIKALVLCIPIAANTG-G 211

Query: 431 FMLPVATAPNAIA 443
              P+ T PNAIA
Sbjct: 212 IATPIGTPPNAIA 224