Pairwise Alignments

Query, 452 a.a., tyrosine recombinase XerD from Alteromonas macleodii MIT1002

Subject, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

 Score = 45.4 bits (106), Expect = 3e-09
 Identities = 52/248 (20%), Positives = 102/248 (41%), Gaps = 14/248 (5%)

Query: 201 SANTVTHYKSKLQELWRWALSREKAQGGNPWLNCKVEASKKKSKPEHYRNFTDEELTHIL 260
           S NT   Y + L+  +R A   +         N +   S  + + +HY   T+++L  ++
Sbjct: 88  SKNTQNRYFNLLKVFYR-AFKLDNFMDFRDESNERKRFSSSRIEVKHYDAITEQDLNLVI 146

Query: 261 AETDFKKLNTSTWAYPYALHMLPRLLPFLGTRLSELALAQKEQFVDVDGRLFFEVREGKT 320
           A+    + +T          ++ R+L   G R+SE+   + E     +G   F +R  K+
Sbjct: 147 AKIFENQSSTKIRDL-----VVIRMLWDTGARVSEVLNLKYEDCDFENGE--FRLRNTKS 199

Query: 321 VNAQRIVPVSPAIKPLVLQVLDRAGDSP--WLFPEIGEAVIGAEGAANSISSKFGKITKG 378
              +++V  S  ++ L           P  +LF    +  +G     N I+  FG+    
Sbjct: 200 HEERKVVCSSDTLELLKCLASYNFKKEPKDYLFQSTNQENLGKIADRNQITRTFGRAVDK 259

Query: 379 FAKVEGYKTG----LHSFRGHFATALEQVGCPEDIATKLAGHKQLSLTYNLYSKYKNKDE 434
             + E  +      +HS R   A  L   G P D+  ++ GH+ L  T       + K++
Sbjct: 260 LKEEEKIQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSHSRQRKEQ 319

Query: 435 LWQYVERI 442
           + Q ++++
Sbjct: 320 MLQDIKKL 327