Pairwise Alignments

Query, 509 a.a., Cyclic di-GMP phosphodiesterase response regulator RpfG from Alteromonas macleodii MIT1002

Subject, 525 a.a., response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  411 bits (1057), Expect = e-119
 Identities = 217/518 (41%), Positives = 316/518 (61%), Gaps = 14/518 (2%)

Query: 3   LFKKSKTEQSTSRQAPWKIAIIDDEEGVHEVTKLTLRKFNFEKRGVEFLSAHSGAEGLAL 62
           LF   KT ++++  APWKI ++DDE  VH VTKL L +F  + R + F++A+S  +    
Sbjct: 11  LFSGKKTTETSASLAPWKILLVDDEPDVHTVTKLALSRFKLDGRALSFINAYSAEQAKEF 70

Query: 63  FKANPDIALAFVDVVMETDDAGLNLVDAIRNELNNHTARLILRTGQPGQAPEEEVIRRYD 122
                D+A+AF+DVVMETD AGL LV  IR +  N T RLILRTGQPGQAPEE+VI  YD
Sbjct: 71  LINEQDLAIAFIDVVMETDHAGLELVKWIREDHKNKTIRLILRTGQPGQAPEEDVIVNYD 130

Query: 123 INDYKAKTELSSLKLKSCVYTAIRSYRDIQTIEQGKR-------GMEDVLKSSSSVLASQ 175
           INDYKAK+EL S KL + VY+A+RSYRDI  IEQ +R       G+E VL+++S +   +
Sbjct: 131 INDYKAKSELDSRKLMTSVYSALRSYRDIMEIEQARRAQVNHRKGLERVLEATSGLFELR 190

Query: 176 SLAQFGTAVLKQTLTLLNLNNSVLYLSTQHTDLYG----DTTMTVLGASGDLVGLCEPGI 231
           +L +F   +L Q  TLLNL++  L L+    D        T + +L  +G      E  I
Sbjct: 191 TLHRFADGLLTQVATLLNLDSETLLLTCNAMDAISGHMESTDIKILAGTGQFA---ETPI 247

Query: 232 SSRIPETIEEEIKQVLENKSHYQSKDLFIGYYPTGEDSHNILYVKLDHPLDALQRKTLEM 291
           +  +P  I++ ++  L +K      + F+GY+PT     N+LY+     +D L +K +++
Sbjct: 248 NKALPSHIDKLLRSALAHKRCLYEDNCFVGYFPTKSGLINLLYMDGIDKIDDLDKKLIDI 307

Query: 292 FASNVAVIFQNLTQKEDIQKTQKELIMVLSDAIEMRSKETGGHVRRVILMTEFLSEKLHM 351
           FA NV V F+NL   ++++ TQ ELI+ L D +E RSKE   HV+R+      L+    +
Sbjct: 308 FAINVGVAFENLLLNQEVEDTQSELILRLGDVVESRSKEAANHVKRMAEYCAQLALIAGL 367

Query: 352 SREFIETIRYSAALHDVGKISIPETILHKPGKLDPEEWEIMKTHAQKGYELLAGSDRIVA 411
           S    + +R ++ +HD+GKI+IP+ +L KPGKLD +EW +M+ H   GY++LA S+R + 
Sbjct: 368 SESEADLLRRASPMHDIGKIAIPDAVLLKPGKLDDQEWSVMRQHPTIGYQILANSERPIL 427

Query: 412 KMGAIIAKTHHERWDGQGYPEGLAGDDIPVEGRIMAIVDVVDALLSKRCYKPAWSPEEVK 471
           K  AIIA  HHE++DG GYP  L  D I +  RI+AI DV DAL   RCYK AW  E+V 
Sbjct: 428 KAAAIIALQHHEKYDGSGYPANLKQDQIHIFARIVAIADVFDALSHARCYKAAWPLEQVI 487

Query: 472 AYLHENSGKQFDPLITHIMIEHFDRILEIRATEPDEDE 509
             + + +GK FDP +  + I++ +  ++++    D DE
Sbjct: 488 DEMRKGAGKHFDPDLLELFIDNIEIFVKVKENWKDHDE 525