Pairwise Alignments

Query, 313 a.a., site-specific tyrosine recombinase XerD from Alteromonas macleodii MIT1002

Subject, 361 a.a., site-specific integrase from Rhodanobacter denitrificans FW104-10B01

 Score = 51.6 bits (122), Expect = 3e-11
 Identities = 77/319 (24%), Positives = 120/319 (37%), Gaps = 60/319 (18%)

Query: 8   DLVSFYVNAATRENTVRSYRTAIEHYERHWGG----------LLPATPTAIAQYL-SHYA 56
           D V   +  A   NT RSY +A+    R+W G           LP     + Q++  H  
Sbjct: 29  DAVRELLAEAAAANTTRSYASAL----RYWAGWHAARYGVELTLPVPEATVLQFVVDHVV 84

Query: 57  DRLTSSTLA-----------------------------HRLAVLAKWHHEYGFPDPTKAP 87
            R T   LA                             HR+AVL+  H      +P + P
Sbjct: 85  RRSTDGELAWELPPTVDQALVAAGLKAKLGPWTLATVRHRVAVLSTAHRLKHMSNPCEQP 144

Query: 88  LVKKVMKGIRATHAYQTKQARPLQLEELKIIIQWLEESIKESKDYRKGLRLIRNKAILLL 147
            ++ V+   RA  A   +  RP   ++  I +  LE  +    D  +G    R++A+L  
Sbjct: 145 AIRTVLS--RAARAAVKRGERP--RKKTAITLMELEAMLATCDDSLEGR---RDRALLCF 197

Query: 148 GFWR-AFRADELTNIHVEYVTMIPNKGM--SLYFPTTKGDRDNKGVTYKVPALQKLCPVT 204
           GF     R  E+    +  +  I  +G    L    T+        T   P L +     
Sbjct: 198 GFASGGRRRSEVAAADLRDLRRIGPQGFIYRLEHSKTQQAGVTAASTPDKPVLDR--AAQ 255

Query: 205 AYQDWVTAAELSKGPLFVGIDRWGHFNHKSMTSNTIINIVRECASGAGLLHPDAFSSHSL 264
           A + W+ AA +++G +F  +  W      +++   +  IV+  A  AGL     F  HSL
Sbjct: 256 ALEAWLAAAGITEGAIFRRL--WKQRVGPALSPAAVSEIVQRRAKLAGL--EGDFGGHSL 311

Query: 265 RRGFASWADSNGWSLKELM 283
           R GF + A   G  L  +M
Sbjct: 312 RSGFVTEASRQGVPLPAIM 330