Pairwise Alignments

Query, 313 a.a., site-specific tyrosine recombinase XerD from Alteromonas macleodii MIT1002

Subject, 345 a.a., tyrosine-type recombinase/integrase from Pantoea sp. MT58

 Score = 67.0 bits (162), Expect = 6e-16
 Identities = 71/278 (25%), Positives = 116/278 (41%), Gaps = 35/278 (12%)

Query: 41  LPATPTAIAQYLSHYADR-LTSSTLAHRLAVLAKWHHEYGFPDPTKAPLVKKVMKGIRAT 99
           LP +   +  YLS  A     SST+    A+++  H   G P P  +PLV + +K I   
Sbjct: 59  LPMSADDLRDYLSFLAQSGRASSTITSHAALISMLHRNAGLPVPNVSPLVFRTIKKINRV 118

Query: 100 ---HAYQTKQARPLQLEELKIII-QWLEESIKESKDYRKGLRLIRNKAILLLGFWRAFRA 155
              +  +  QA P +L +L ++  +W            + L+L+R+ A L + +    R 
Sbjct: 119 AVMNGERAGQAVPFRLTDLLVLDGKW---------SGAENLQLVRDLAFLHVAYATLLRI 169

Query: 156 DELTNIHVEYVTMIPNKGMSLYFPTTKGDRDNKGVTYKVP--ALQKLCPVTAYQDWVTAA 213
            EL+ + V  V    +  + L    TK      G+   +   + Q+L      + W+ A+
Sbjct: 170 SELSRLRVRDVMHAVDGRIILDVAWTKTIVQTGGLIKALGTRSTQRL------EQWIEAS 223

Query: 214 ELSKGP---LFVGIDRWGHF--NHKSMTSNTIINIVRECASGAGLLHP--------DAFS 260
            LS  P   LF  + R G      K M++  +  I       AG +            +S
Sbjct: 224 GLSNQPDAYLFTAVHRSGRVLVAEKPMSTRALEQIFNRAWRSAGNVGAVKANKNRYSGWS 283

Query: 261 SHSLRRGFASWADSNGWSLKELMEYVGWKDPKTALRYI 298
            HS R G A     NG+ +  +M+   WK P+T +RYI
Sbjct: 284 GHSARVGAAQDMADNGYPIARIMQEGTWKKPETLMRYI 321