Pairwise Alignments

Query, 491 a.a., Malate-2H(+)/Na(+)-lactate antiporter from Alteromonas macleodii MIT1002

Subject, 501 a.a., Na+/H+ antiporter NhaC (RefSeq) from Shewanella sp. ANA-3

 Score = 62.8 bits (151), Expect = 3e-14
 Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 13/183 (7%)

Query: 44  ALLLAMGLAAIIGMKNGYSWKTIEKGIVDGISMSLGACLILLAVGSLIGTWMLA------ 97
           A LL+  +  ++ M +G S   +   +  G+ M      I  A+  L+ TWM+       
Sbjct: 289 ACLLSTLVTLVLLMLSGRSIGKLLGDLAHGVRM------IAFAIAILLCTWMIGAVIQDL 342

Query: 98  GTVPTLIYFGLELLNPSFFYAAACLICAVVAMSIGSSWTTAATVGVALMGVSAGMEMSAA 157
           G    L  +    L+PS   A   L+CA++A + GSSW T A +      ++  M+ S  
Sbjct: 343 GVASLLASWAKLYLSPSLLVAGMFLLCAIMAFATGSSWGTFAIMLPIGGEIAHNMDASLL 402

Query: 158 I-TAGAVVSGAYFGDKISPLSETTNLAPAVAGTDLFEHIRYMLWTTIPSFVIALILFTVL 216
           +    AV++G+ FGD  SP+S+T+ L+   +G    +H+   L   +     AL+ F ++
Sbjct: 403 LPVLSAVMAGSVFGDHCSPISDTSVLSATSSGCLPHDHVVTQLPFALIGAGAALVGFQLV 462

Query: 217 GFS 219
             S
Sbjct: 463 NLS 465



 Score = 26.6 bits (57), Expect = 0.002
 Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 21/145 (14%)

Query: 216 LGFSEVGEAKAERIEQMQLLLNESFDLGWHLLIPLVVLLTLAIKKMPAFPAVFIGALLGG 275
           +GFS + +A     E ++  L+ S    W L IP++ LL  ++           G  L  
Sbjct: 216 MGFSSIEKALLAA-EPVEPSLSSSKGNPWLLAIPMLTLLGASV-----------GLTLWS 263

Query: 276 VWAVVFQWDVVTSMASGDDSVNVGALK---VVWTALFDGVSFSTPDENLNSLLS--RGGM 330
               V  WD+   +A  D    +GA      + + L   V       ++  LL     G+
Sbjct: 264 GAQQVPSWDISAWLAKAD----IGAAMRDACLLSTLVTLVLLMLSGRSIGKLLGDLAHGV 319

Query: 331 SSMLNTIWLIICAMSFGAVLERVGL 355
             +   I +++C    GAV++ +G+
Sbjct: 320 RMIAFAIAILLCTWMIGAVIQDLGV 344



 Score = 26.2 bits (56), Expect = 0.003
 Identities = 48/243 (19%), Positives = 100/243 (41%), Gaps = 50/243 (20%)

Query: 247 LIPLVVLLTLAIKKMPAFPAVFIGALLGGVWAVVFQWDVVTSMASGDDSVNVGALKVVWT 306
           ++PL++ L LA+       A+ +G L G +  ++ Q+D++ S+      + +GA +    
Sbjct: 8   ILPLLLTLVLALWLRRTLVALGVGILSGAL--IIAQFDILQSLGY---LLEIGAKQ---- 58

Query: 307 ALFDGVSFSTPDE----NLNSLLSRGGMSSMLNTIWLIICAMSFGAVL-ERVGLLKRA-V 360
                  F + D     +LN L++   + SM   +        FG  L  R+   ++A +
Sbjct: 59  -------FYSQDAWQWWHLNVLMAMLLLGSMTQLLARSGAVEQFGDWLYRRIRTGRQARI 111

Query: 361 SAILIGAKSAGDMVSRTILTCFGTNLVTADQYISIVMPGRMYKEEFKKRGLDQLNLSRSL 420
             +L+G                   LV  D   S +  G + +   ++ G+ Q  L+  +
Sbjct: 112 GVVLLGW------------------LVFIDGIFSCLAVGHVCQPLSQRYGIRQTQLAYLV 153

Query: 421 EDGGTLTSPLIPWNTCGAYMHSVLLVNPF----------DYVFYAFFNVINPILAVIYAY 470
           +   +    L+P+++ G Y+ ++L    F          D     F+ +    L++I A+
Sbjct: 154 DSNASPLCSLLPFSSWGPYVMALLAGLSFLPVSALEAFIDVALSNFYAITTLGLSLIVAW 213

Query: 471 LGI 473
            G+
Sbjct: 214 FGM 216