Pairwise Alignments

Query, 234 a.a., Sensor protein SrrB from Alteromonas macleodii MIT1002

Subject, 497 a.a., sensor histidine kinase KdpD from Vibrio cholerae E7946 ATCC 55056

 Score = 73.6 bits (179), Expect = 7e-18
 Identities = 70/238 (29%), Positives = 118/238 (49%), Gaps = 16/238 (6%)

Query: 1   MSSSKQVTSTIDFSSVLAAAVHDMKNSLFLLIQSIETLSD-ALSPHDEKAREQVASVHYE 59
           + + KQ+ ST   +++LA+  HD+K  L  +I S  TL+D +L    E  +E + S+  +
Sbjct: 260 VEAEKQLESTR--TTLLASVSHDLKTPLGAIIGSATTLTDPSLHLSTETQQELLTSIAEQ 317

Query: 60  ASRLNTNLVQVLSLYRAELESLPITVDESFIKDLVEDVVGSNALYVSQKNIDISIAIEDD 119
             RLN +L ++L + R    +L   +D    ++L+  V+   A  ++   + I       
Sbjct: 318 GERLNRSLTKLLDITRYTASALVPKLDWVEPEELIGTVLSRLAPRLTHHKVQIE---SQP 374

Query: 120 LSWYLDSELIYLLLNDVIINAMRYGT--SKIIVSAKADENDFMTIKIEDDGRGYPEAMLT 177
           +   LDS LI  +L +++ NA +Y    S+I ++    E  F T+ + D+G G P+  L 
Sbjct: 375 MLVELDSLLIEQVLINLVENAAKYTPRGSEIEIACAYQEQQF-TLAVMDNGAGIPDEALP 433

Query: 178 KSHEELCDFELSQG-RTGLGLFFAKLIANAHSQGDKVGSIALSNGGSLGGSVFEVKIP 234
           +  +     E +    TGLGL   ++I  AH      GSI + N  S GG+ F V IP
Sbjct: 434 RIFDRFYRVEGNHADGTGLGLAICQVIVAAHQ-----GSIRVHNRES-GGACFTVTIP 485