Pairwise Alignments

Query, 884 a.a., DNA topoisomerase 1 from Alteromonas macleodii MIT1002

Subject, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

 Score =  120 bits (302), Expect = 2e-31
 Identities = 171/616 (27%), Positives = 274/616 (44%), Gaps = 88/616 (14%)

Query: 5   LVIVESPAKAKTINKYLGKNFIVKSSVGHVR----DLPTKALGKVEPKKPAKELKTLSEE 60
           L I E P+ A+ I   L K    K   G +R    D+ T  +G +           L + 
Sbjct: 4   LFIAEKPSLARAIADALPKPH--KKEQGCIRCANGDIVTWCIGHL-----------LEQV 50

Query: 61  ERQEYLRRHEYLKLVDRMGVDPEKDWKAHYQVLQGKEKVVNELKKLAKDADTIYLATDLD 120
           E   Y  R++   + D + + PE+ W+   +    ++  V  ++KL K+A  I  A D D
Sbjct: 51  EPDAYDERYKKWNMAD-LPIIPEQ-WQLRPRKSSSQQLTV--VRKLLKEATQIIHAGDPD 106

Query: 121 REGEAIAWHLQELLG---KKDKTYQRVVFNEITKNAIQDAFSDPGE------LNISRVNA 171
           REG+ +   + +       K +T QR++ +++  +A++ A            L++S +  
Sbjct: 107 REGQLLVDEVIDYCKVPKSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSAL-- 164

Query: 172 QQARRFLDRVVGFMVS---PLLWKKIARG--LSAGRVQSVAVRLVVEREREIKAFVPEEF 226
             AR   D + G  +S    LL KK      LS GRVQ+  + LVV R+ EI+ F+P ++
Sbjct: 165 --ARSRADWLYGMNMSRAYTLLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDY 222

Query: 227 WDVHADLTSQQKAALRMLVAKHQ-GNAFKPKNKAE---TDKALADLEG---ANYKVESRE 279
           + + A +  Q       + A+ +   A  P    E   T++ L D      AN      E
Sbjct: 223 FTLDALIPYQNGTEYFDIRARWKPSEACLPWQDEEGRVTNRKLVDNVASRIANQPATVTE 282

Query: 280 SKPTQSRPSA--PFITSTLQQAASTRLGFGVKKTMMMAQRLYEA-GYITYMRTDSTNLSQ 336
           S+  Q++ +A  P+  S LQ  A+ R  F  ++ + + Q LYE    ITY R+D   L +
Sbjct: 283 SEQDQTKQAAPLPYSLSALQIDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPK 342

Query: 337 EALDSAR---AYISDNFGDKY--LPDSPNRYGSK---EGAQEAHEAIRPSNVSISAASLG 388
           E L  A    A I++N  +    + D+     SK   +   +AH AI P+    S  +L 
Sbjct: 343 EHLAQAPDVVAAIANNAQEMVTAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALS 402

Query: 389 DMERDAQRLYELIWRQFVACQMTPAKYDA---TTIKVAAGDYELTAKGRVLKFDGWTRVQ 445
             E    ++Y+LI RQ++  Q  PA   A       +A G +   AKGR L   GW  + 
Sbjct: 403 GHE---MKVYQLIARQYL-MQFYPAAIYAEAKLVFNIAGGIF--IAKGRQLLSAGWKVLT 456

Query: 446 PQLRKKGEEELMLPDVQKGDVLDLKALDPKQHFTKPVARFNEASLV------------KE 493
            Q  ++ E    +P +  G VL  +  + KQ  T+P   F EA+L+            KE
Sbjct: 457 GQQDEQEECVDKVPPLPVGIVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKE 516

Query: 494 LEK-----RGIGRPSTYASIISTIQDRGYVRLENKRFYAEKMGEIVNDRLMENFDDLMSY 548
           L+K      G+G  +T A I+ T+  RG ++ +NK   +   G      L+       +Y
Sbjct: 517 LKKILRETDGLGTEATRAGILDTLFKRGLLQRDNKLIKSTPAGR----GLIHALPSEATY 572

Query: 549 -DFTANMEQHLDDIAE 563
            D TA+ E  L  IAE
Sbjct: 573 PDMTAHWEHQLQAIAE 588