Pairwise Alignments

Query, 884 a.a., DNA topoisomerase 1 from Alteromonas macleodii MIT1002

Subject, 190 a.a., DNA topoisomerase from Vibrio cholerae E7946 ATCC 55056

 Score = 43.5 bits (101), Expect = 1e-08
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 11/81 (13%)

Query: 719 CDKCGSDMELKNGRFGKYFGCTK-EECKNTRKLLRNGEAAPPKEDPVDLPEL--PCEKSD 775
           C +CG+ ++L++G+ G + GCT   EC   + L +N        D   + EL  PC +  
Sbjct: 24  CPQCGAALQLRHGKHGPFLGCTAYPECDYIKPLHQN--------DGHIIKELGVPCPECG 75

Query: 776 AHFMLRDGASGIFLAAHNFPK 796
              +LR G  G+F+   ++P+
Sbjct: 76  HELVLRQGRYGMFIGCSHYPQ 96



 Score = 40.8 bits (94), Expect = 7e-08
 Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 36/147 (24%)

Query: 604 GVECDKCGREMNVRTASTGVFLGCSGYNLPPKERCTNTMNLTPGDEVVKVDDEEELETEA 663
           GV C +CG E+ +R    G+F+GCS Y      +C +        E +    +EE   + 
Sbjct: 68  GVPCPECGHELVLRQGRYGMFIGCSHY-----PQCHHI-------ESMDSPSQEETSPDI 115

Query: 664 LRSKKRCPKCGTAMDSYLVDETRK----LHVCGNTPTCDGTLVETGTFKIKGYDGPIIE- 718
           L     CP+CG     +L++   +     + C   P C          K      PI + 
Sbjct: 116 L-----CPECG---KGHLIERKSRFGKLFYACDAYPKC----------KFALNSKPIAQA 157

Query: 719 CDKCG-SDMELKNGRFGKYFGCTKEEC 744
           C +CG + M  K    G  + C   +C
Sbjct: 158 CAQCGFTVMVEKKSAAGMRYQCANRQC 184



 Score = 40.0 bits (92), Expect = 1e-07
 Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 22/155 (14%)

Query: 652 KVDDEEELETEALRSKKRCPKCGTAMDSYLVDETRKLHVCGNTPTCDGTLVETGTFKIKG 711
           K+D +     E       CP+CG A+          L  C   P CD          +  
Sbjct: 6   KIDPQLFAAHEHALQSSPCPQCGAALQLRHGKHGPFLG-CTAYPECDYIK------PLHQ 58

Query: 712 YDGPIIE-----CDKCGSDMELKNGRFGKYFGCTK-EECKNTRKLLRNGEAAPPKEDPVD 765
            DG II+     C +CG ++ L+ GR+G + GC+   +C +   +      +P +E+   
Sbjct: 59  NDGHIIKELGVPCPECGHELVLRQGRYGMFIGCSHYPQCHHIESM-----DSPSQEE--T 111

Query: 766 LPELPC-EKSDAHFMLRDGASG-IFLAAHNFPKSR 798
            P++ C E    H + R    G +F A   +PK +
Sbjct: 112 SPDILCPECGKGHLIERKSRFGKLFYACDAYPKCK 146



 Score = 33.1 bits (74), Expect = 1e-05
 Identities = 35/134 (26%), Positives = 52/134 (38%), Gaps = 24/134 (17%)

Query: 607 CDKCGREMNVRTASTGVFLGCSGYNLPPKERCTNTMNLTPGD-EVVKVDDEEELETEALR 665
           C +CG  + +R    G FLGC+ Y       C     L   D  ++K     EL      
Sbjct: 24  CPQCGAALQLRHGKHGPFLGCTAY-----PECDYIKPLHQNDGHIIK-----ELGVP--- 70

Query: 666 SKKRCPKCGTAMDSYLVDETRKLHV-CGNTPTCDGTLVETGTFKIKGYDGPIIECDKCGS 724
               CP+CG  +   L      + + C + P C    +E+     +    P I C +CG 
Sbjct: 71  ----CPECGHEL--VLRQGRYGMFIGCSHYPQCHH--IESMDSPSQEETSPDILCPECGK 122

Query: 725 DMEL-KNGRFGKYF 737
              + +  RFGK F
Sbjct: 123 GHLIERKSRFGKLF 136