Pairwise Alignments

Query, 884 a.a., DNA topoisomerase 1 from Alteromonas macleodii MIT1002

Subject, 187 a.a., DNA topoisomerase type IA Zn finger domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score = 50.4 bits (119), Expect = 9e-11
 Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 26/158 (16%)

Query: 648 DEVVKVDDEEELETEALRSKKRCPKCGTAMDSYLVDETRKLHVCGNTPTCDGT--LVETG 705
           DE +    E  LE E     + CP+CG+ + S    +      C N PTC  T  LV+  
Sbjct: 5   DEQLFSAHEHALEKEF----ELCPECGSEL-SVKHSKHGSFIGCNNYPTCQYTRPLVQHE 59

Query: 706 TFKIKGYDGPIIECDKCGSDMELKNGRFGKYFGCTK-EECKNTRKLLRNGEAAPPKEDPV 764
           + + +  +G   +C +CG ++ +K+GRFG + GCT+   C +  +        P +E+  
Sbjct: 60  SIETQVIEGS--KCPECGHELAVKSGRFGIFIGCTQYPSCTHIER--------PDQEN-- 107

Query: 765 DLPELPCEKSDA----HFMLRDGASGIFLAAHNFPKSR 798
           D PE+ C +       H   R G S  F A   +PK +
Sbjct: 108 DKPEVACPECKTGKLEHRTSRFGKS--FYACSAYPKCK 143



 Score = 45.4 bits (106), Expect = 3e-09
 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 30/145 (20%)

Query: 607 CDKCGREMNVRTASTGVFLGCSGYNLPPKERCTNTMNLTPGDEVVKVDDEEELETEALRS 666
           C +CG E++V+ +  G F+GC+ Y       C  T  L            E +ET+ +  
Sbjct: 23  CPECGSELSVKHSKHGSFIGCNNY-----PTCQYTRPLV---------QHESIETQVIEG 68

Query: 667 KKRCPKCGTAMDSYLVDETRKLHV---CGNTPTCDGTLVETGTFKIKGYDGPIIECDKCG 723
            K CP+CG      L  ++ +  +   C   P+C  T +E      +  D P + C +C 
Sbjct: 69  SK-CPECG----HELAVKSGRFGIFIGCTQYPSC--THIERPD---QENDKPEVACPECK 118

Query: 724 S-DMELKNGRFGK-YFGCTK-EECK 745
           +  +E +  RFGK ++ C+   +CK
Sbjct: 119 TGKLEHRTSRFGKSFYACSAYPKCK 143



 Score = 43.5 bits (101), Expect = 1e-08
 Identities = 35/149 (23%), Positives = 57/149 (38%), Gaps = 31/149 (20%)

Query: 604 GVECDKCGREMNVRTASTGVFLGCSGYNLPPKERCTNTMNLTPGDEVVKVDDEEELETEA 663
           G +C +CG E+ V++   G+F+GC+ Y       CT+         + + D E +     
Sbjct: 68  GSKCPECGHELAVKSGRFGIFIGCTQY-----PSCTH---------IERPDQEND----- 108

Query: 664 LRSKKRCPKCGTAMDSYLVDETRK-LHVCGNTPTCDGTLVETGTFKIKGYDGPIIECDKC 722
            + +  CP+C T    +      K  + C   P C           I  Y      C  C
Sbjct: 109 -KPEVACPECKTGKLEHRTSRFGKSFYACSAYPKCK---------FIVNYPPVAETCPSC 158

Query: 723 GSDMEL-KNGRFGKYFGCTKEECKNTRKL 750
           G  + + + G  G    C ++ CK  R L
Sbjct: 159 GFGILVERKGAAGMRLECPQKSCKYKRAL 187