Pairwise Alignments

Query, 1260 a.a., Sensor kinase protein RcsC from Alteromonas macleodii MIT1002

Subject, 1353 a.a., PAS from Pseudomonas syringae pv. syringae B728a

 Score =  262 bits (669), Expect = 2e-73
 Identities = 210/711 (29%), Positives = 343/711 (48%), Gaps = 70/711 (9%)

Query: 354  NSKNIELAKVRGESVAII-AISKDAIFSVDSAGVVKSWNMAAESLFG------------- 399
            + +  EL++V G    ++ A S+ +I + D+ G +  +N  AE L G             
Sbjct: 480  SERTAELSRVAGLLQGVLDASSEVSIIATDTQGQIFVFNRGAELLLGYSNSEMLSGNGPG 539

Query: 400  ---IPSQLILNHHYSSFEQLSLL-GLESVLTKGGKQSTFTTPYTDDEKEEHTL--LITAS 453
               +P ++       S E  +L+ G++    K  ++ + T  +T   K+  T+  L+  +
Sbjct: 540  VFHLPEEVAARSAELSREYGTLIEGIDVFCYKASREGSETRQWTYVRKDGTTVPVLMIIT 599

Query: 454  TIWGEQSQFSGVAVVIRDVTDERKAKDAIERVNLKLEEKVVSRTKELVEATQEARKASKV 513
             I     +  G   + +D+T+                   +  + EL  A   A  A+  
Sbjct: 600  PIRTADGELIGHLGIAQDITER------------------LHHSAELHAAKSSAEAANAA 641

Query: 514  KSSFISNISHEMRTPLNGVVGSLALLKRQPLNEKAEQLVSMMEISCNNLSVLINDVLDLS 573
            KS F++N+SHE+RTP+N V+G   LL    LN++  QL++ ++I+   L  +IND+LD++
Sbjct: 642  KSLFLANMSHEIRTPMNAVIGISHLLHNTALNDQQRQLLTKLQIAGRTLLGIINDILDIA 701

Query: 574  KIEAGKLDINNQYFDPLALIESIAKVFAVKAASKGLQLLVDTTGLPPVEINSDPHRINQI 633
            KIEAG++ + +  F P  L++ + ++F  +A  KGL+  V+     P ++  D  R+NQI
Sbjct: 702  KIEAGEMRLEHNPFSPRQLLDELGELFTPQAQEKGLRFSVNVVASLPGQLIGDALRVNQI 761

Query: 634  LSNLLNNAIKFTEEGHIKLQASLSDVDAGTQQLHFSVCDTGVGIAQENQPKLFTAFTQAD 693
            L NL+ NA+KFT  G + +  S  D  A T  L FSV DTG GI  +   +LF+ FTQAD
Sbjct: 762  LMNLVGNALKFTSVGGVDVTVSREDDHADTCCLRFSVQDTGCGIPGDVLGQLFSPFTQAD 821

Query: 694  ASVATQYGGTGLGLSICKQLSQLMGGDITFNSEVDIGSTFSFFVTLPETTYDSAFEHKMA 753
            AS   ++GGTGLGLS+ + L++ MGG I   SE+  GS   F+V LP     S  E    
Sbjct: 822  ASTTRRFGGTGLGLSVVRGLAEQMGGRIGVESELGTGS--EFWVELPFQISQSDLEPSGP 879

Query: 754  VENESMLLNGITIGVSASYPPLEENICCLALHVGAEPQVLGKHSELGTVPWTQLNAIIVD 813
              +  ++L       S +   L   +      +  E  +     E   V     + ++VD
Sbjct: 880  GSSLEVMLLSDDAQSSMALQRLCRGLGWRVASLTGEHDLRTALQERNHVNAALPDVLLVD 939

Query: 814  EASSLIRELDDIWQAQAATKDAGSLPVVYILQKLEGTPFHFNHLVPLYLPKPLFRSSFAI 873
                 + E+  + +A         LPV+ +         H   LV   L KPL  S+   
Sbjct: 940  WQQPQVEEVQQLIEAT-------PLPVILVTSSEIRAELH--PLVDKVLLKPLDSSA--- 987

Query: 874  VQQGLDAALSGYTLNQSDISSGKGKAEDISNDEGAADDTEQQLSIENANLLIVDDNMINR 933
            +   ++A ++ Y          +G  E +   +    DT   L +   +LL+VDD+ IN 
Sbjct: 988  LFNAVNACIARY----------QGSTERVI--QATRMDTSMTLWLSGLHLLLVDDSEINL 1035

Query: 934  EVAKGVLESLPVRLFTCSDGEEVVAFLTKCESKGRRIHSILMDCQMPNMNGYDATRAIRE 993
            EVA  +L+     + TCS+G   +  L +         ++LMD QMP M+GY+ATR +R 
Sbjct: 1036 EVASLLLQQQGAVVQTCSNG---LLALERLRQTPDFFDAVLMDVQMPEMDGYEATRRLR- 1091

Query: 994  GKAGAMHKDVPIIAMTANAMLGEKEKCLAAGMDDFATKPVMADVLIPKVKQ 1044
             + G     +P++A+TA A+  E+ +   AGMDDF TKP+    LI  V++
Sbjct: 1092 SELGLTR--LPVLALTAGALAEERRQAELAGMDDFLTKPLDPAALIRAVRR 1140



 Score = 51.6 bits (122), Expect = 5e-10
 Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 20/179 (11%)

Query: 335 VIGVVTLIFVSVL---LFVHRSNSKNIELAKVRGESVAIIAISKDAIFSVDSAGVVKSWN 391
           +IG +  + ++VL   L + R   + +   + R     I+  S DAI      G + +WN
Sbjct: 315 IIGTLVSLMLTVLVGTLLLSRQRKQQVVAGQAR--LATIVENSSDAIIGEALDGRIITWN 372

Query: 392 MAAESLFGIPSQLILNHHYSSF----------EQLSLLGLESVLTKGGKQSTFTTPYTDD 441
            AAE +FG     +L    +            EQL    LE V  +G +  T  T     
Sbjct: 373 RAAEQMFGYDEHEVLGRPLAPLLVPPELVHEDEQL----LERV-ARGERGPTLETRRLHK 427

Query: 442 EKEEHTLLITASTIWGEQSQFSGVAVVIRDVTDERKAKDAIERVNLKLEEKVVSRTKEL 500
             +   + IT S I        G A ++ D+TD ++ +  +   N +LE++V  RT EL
Sbjct: 428 NGQLIDVTITCSFIRETDGTLLGAAKMMHDITDRKRVERYLMEFNAQLEQQVSERTAEL 486