Pairwise Alignments

Query, 173 a.a., hypothetical protein from Alteromonas macleodii MIT1002

Subject, 176 a.a., 16S rRNA processing protein RimM (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 49.3 bits (116), Expect = 4e-11
 Identities = 43/173 (24%), Positives = 81/173 (46%), Gaps = 11/173 (6%)

Query: 4   ASDKVIVGKIGAPYGVKGWVKINSYTETP---EGIFDYAPWFLGDEKEYQIDQWRPHGKS 60
           AS  + +G +  P+G+KG V ++ Y ++P   EG   Y        +  ++   R H   
Sbjct: 3   ASRFIEIGLLTRPHGLKGEVCVDYYADSPFLLEGTV-YLKAGRAAPRPVKVQSMRMHKGR 61

Query: 61  LVAKIVGVDSRDDAERIKNLDININASQLPDLGDEGVYWRELTGMKVVTTQ-GYDLGVVK 119
            +    GV+ R  AE ++   + +    LP+L ++ VY  EL G+ VV  + G  LGV++
Sbjct: 62  PLVIFEGVNDRTAAELLRGHVMLVPEDTLPELDEDEVYLFELEGISVVIDESGEHLGVIE 121

Query: 120 EVFNTGANDVIHVKANVGDAFGQKERLLPFVFDEVVQEVDKEAKIIKVDWDPG 172
            +      ++  ++   G     KE L P     V+ ++D +++  ++   PG
Sbjct: 122 RIDTDAYQEIWVIRTPQG-----KEVLFPAAAPFVL-DIDLDSRTARIAPPPG 168