Pairwise Alignments

Query, 290 a.a., Inner membrane lipoprotein YiaD precursor from Alteromonas macleodii MIT1002

Subject, 294 a.a., flagellar protein MotY from Vibrio cholerae E7946 ATCC 55056

 Score =  228 bits (580), Expect = 2e-64
 Identities = 115/283 (40%), Positives = 180/283 (63%), Gaps = 2/283 (0%)

Query: 9   ALLGMLGSLSSHAAMRQYSATIESSNWRIDKDTRLQCTLNHELPGYGEAMFTSSASKQLN 68
           A+  +  S++S   +R Y AT + S W++  +T L+C L H +P YG+A F+S A K++N
Sbjct: 11  AISTLSASVASALEVR-YMATPQQSTWQMATNTPLECRLVHPIPNYGDAEFSSRAGKKIN 69

Query: 69  MEFELDMYLLPSKFDMAAVYSVPPKWMPGVAPKTIADMSIRKQYNGDLPQDAAWTMLSEL 128
           ++FEL M          ++ S+PP W PG     I ++   KQ++G +    AW++LSEL
Sbjct: 70  LDFELKMRRPMGDTRNVSLVSMPPVWRPGEGADRITNLQFFKQFDGYIGGQTAWSLLSEL 129

Query: 129 EKGFWPTIYYQDWYNKYDQVSVALNASNFSGVYREFVKCVSNLLPFGFDDIAYTVLSY-Q 187
           EKG +PT  YQDW ++  ++ VAL++  F   Y EF  C+S LLP+ F+DI++T+L Y Q
Sbjct: 130 EKGRYPTFSYQDWQSRDQRIEVALSSVLFQQPYNEFSDCISKLLPYSFEDISFTILHYDQ 189

Query: 188 NNSTELTKYSQKRLTMIGEYLKEDSELELVLLDGYTDSYGGRYNNEQLSIRRANEVKSYL 247
             S EL K SQKRL  I EY++ + +++LVL+  YTDS     N++ LS +RA  ++ Y 
Sbjct: 190 GTSVELNKASQKRLAQIAEYVRYNQDIDLVLVSTYTDSTDTNNNSQNLSEQRAEVLREYF 249

Query: 248 TTLGVPEDRIQLTGHGEKRHIAPNDTRESRAQNRRVVVRLSKS 290
            ++G+PEDRIQ+ G+G++R IA N +   + +NRRVV+ L ++
Sbjct: 250 KSIGLPEDRIQVQGYGKRRPIADNASPIGKDKNRRVVISLGRT 292