Pairwise Alignments

Query, 373 a.a., Phage shock protein F from Alteromonas macleodii MIT1002

Subject, 336 a.a., Sigma54 Specific Transcriptional Regulator containing PAS, and Fis DNA-binding domains (NCBI) from Rhodospirillum rubrum S1H

 Score =  302 bits (774), Expect = 8e-87
 Identities = 167/354 (47%), Positives = 223/354 (62%), Gaps = 30/354 (8%)

Query: 10  LLGQSNSFLEVLEQISQIAPLDKPVLVIGERGTGKELIAARLHFLSKRWDQNYIKLNCAA 69
           ++G+  +FL+V+EQ S++AP+D+P LV+GERGTGKEL+AARLH+LS+RW    +K+NCAA
Sbjct: 7   IIGEDPAFLDVIEQASRLAPIDRPCLVVGERGTGKELVAARLHYLSRRWQGPLVKVNCAA 66

Query: 70  LSESLLESELFGYEAGAFTGASKRREGRFEVAHNGTLFLDELANTSGLIQEKLLRVVEYG 129
           LS++LLESELFG+EAGAFTGA +R  GRFE A  GTL LDE+AN S  +QEK+LRV+EYG
Sbjct: 67  LSDTLLESELFGHEAGAFTGAQRRHLGRFERAEGGTLILDEIANASQAVQEKVLRVIEYG 126

Query: 130 EFERVGGSKSVKTDVRLIAATNEDLPALADAGEFRADLLDRLAFDVITIPPLRERREDIM 189
           E ERVGG+ +++ DVR+I   N DLP  A  G FRADLLDRLAFDV+T+PPLR R  DI+
Sbjct: 127 ELERVGGAATLRVDVRVIGVANVDLPKRAAEGGFRADLLDRLAFDVLTLPPLRARPGDIL 186

Query: 190 MLAENFAINMAREMEMELFSGFTEKAKRTLLDYDWPGNIRELKNVVERAVYRTNNPHLPV 249
            LAE FA  MA ++E      F+  A+  LL + WPGN+REL+N  ER V R       +
Sbjct: 187 ALAEAFARAMAGDLERPA-PAFSPAARAQLLGHGWPGNVRELRNASERTVARLPREATVI 245

Query: 250 HEIVLDPFESAYRPKGRVKTNDRVNTPDSPVTQSPSEAAATNERIESADITPLAPVKKPE 309
             +V+DPF S +                 P   SP++ A             L P  +P 
Sbjct: 246 ETVVIDPFASPWCLAAAPAA--------PPAILSPADGA-------------LPPEGQP- 283

Query: 310 IVEYPIDLKERSQQHEIDMIKQALADSQFNQKKTAEKLSLTYHQLRGYLKKYNL 363
                         +E  ++++ALA ++ NQ K A+ L L YHQ R  L ++ L
Sbjct: 284 -------FAAAVAAYEQGLLRRALAAAEGNQGKAAQALGLGYHQFRRLLARHGL 330