Pairwise Alignments

Query, 373 a.a., Phage shock protein F from Alteromonas macleodii MIT1002

Subject, 482 a.a., sigma-54 dependent trancsriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  227 bits (579), Expect = 5e-64
 Identities = 116/256 (45%), Positives = 168/256 (65%), Gaps = 1/256 (0%)

Query: 1   MSRYRQQDNLLGQSNSFLEVLEQISQIAPLDKPVLVIGERGTGKELIAARLHFLSKRWDQ 60
           ++ +RQ+ N+ G+S +   +++QI  +A     VL+ GE GTGKEL+A  +H LS R DQ
Sbjct: 168 LASHRQEVNISGESETIQSLIQQIKLVANTSSTVLINGENGTGKELVARNIHALSDRSDQ 227

Query: 61  NYIKLNCAALSESLLESELFGYEAGAFTGASKRREGRFEVAHNGTLFLDELANTSGLIQE 120
             + +NCAA S +LLESELFG+E GAFTGA+ RR+GRFE+AH GTLFLDE+A  S   Q 
Sbjct: 228 PLVSVNCAAFSPTLLESELFGHEKGAFTGATSRRKGRFELAHQGTLFLDEVAELSLEAQS 287

Query: 121 KLLRVVEYGEFERVGGSKSVKTDVRLIAATNEDLPALADAGEFRADLLDRLAFDVITIPP 180
           KLLRV++  EFERVG S  +K D+RL+ AT+ DL    + G FR DL  RL    + +PP
Sbjct: 288 KLLRVIQEQEFERVGSSTPIKVDIRLVTATHHDLLKRVEQGLFRMDLYYRLNVFPLHVPP 347

Query: 181 LRERREDIMMLAENFAINMAREMEMELFSGFTEKAKRTLLDYDWPGNIRELKNVVERAVY 240
           LRER +DI +L  +  +N+  ++  ++  G +++  + L+ Y WPGN+REL+NV+ER   
Sbjct: 348 LRERLQDIPLLVSDILLNLNHKLGKKI-KGVSKQGMQHLMAYHWPGNVRELQNVIERQTI 406

Query: 241 RTNNPHLPVHEIVLDP 256
             +   L +  +  +P
Sbjct: 407 LCHGQILQIPALQAEP 422