Pairwise Alignments

Query, 586 a.a., Dipeptide-binding protein from Alteromonas macleodii MIT1002

Subject, 540 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  394 bits (1013), Expect = e-114
 Identities = 222/579 (38%), Positives = 315/579 (54%), Gaps = 49/579 (8%)

Query: 8   RLSLCICTALLVASCAKQ-NKQAFYNTGIIYCSESNPVTFNPQLDTSSTTSDASSHQLYD 66
           R +L +C+  L+A C +  +     ++G +YC ES P TFNPQL  +  TSDA   Q+Y+
Sbjct: 6   RFTLGLCSMTLLAGCGENIDHSKIRSSGFVYCGESAPTTFNPQLADNDITSDALGPQIYN 65

Query: 67  RLLDFDPESGRIVPSLASSWLVSDDGLTYAFQLRKDVWFHNTRYFTPTRNFNADDVIFSI 126
            LL  DPE+   V SLASSW V+  GL Y F+LR DV F  T +F+PTR  NADDV+FS 
Sbjct: 66  TLLTIDPETHLPVASLASSWTVNSTGLEYVFKLRPDVAFQTTPWFSPTRPLNADDVVFSF 125

Query: 127 DRWRLRSHPYHYVSGGRYPYFESIGLAQNIASVERVNGYRVEITLKRRDSSFLANLATDF 186
            R    ++PYH V   +YP+F+ I     +  V  ++   V+  L R D+SFL+N+AT  
Sbjct: 126 RRIIDPTNPYHKVGQTQYPWFKGIDFQNLLVDVSALDDLTVKFVLSRPDNSFLSNIATSH 185

Query: 187 AVILSEEYANQLAQTGTPGKIDELPVGTGPFKFDSYRKDHFIKFLRHDNYWRDQMEDAPT 246
           AVILS EYANQL       K+D LP+GTGPF    Y     I+  RH  YW         
Sbjct: 186 AVILSLEYANQLIIDDEKEKLDNLPLGTGPFYLAEYHPRDLIRLKRHPQYW--------- 236

Query: 247 SDEVLSDNNTVESANQEVENGQGGEDTVQDGTAQNGDETRPVVEQLIFDITPRSSLRLAK 306
                                        +G A+        VEQ++FDI+ R +  LAK
Sbjct: 237 -----------------------------EGAAK--------VEQVVFDISQRGTGMLAK 259

Query: 307 LMTGECDATAFPAQTELEVIRAKEDLTLAEKPGLNIGFWAFNTQRPPFDNPDVRRALAAA 366
           L+  ECD    P  ++L  I    D+ L   P +N+ F A NTQ P  ++  VR+AL  A
Sbjct: 260 LLRNECDVLNAPISSQLPAIEKNPDIVLQTTPAMNVAFIAVNTQHPALNDNRVRKALNFA 319

Query: 367 IDKNTLLEAVYFDSATRAKTLLPAASWAFQNDADDTAYNPVLARKLLADAGVKAGFSMTI 426
           I++  +L++VY+ + + A T+LP  SWA+Q D     Y+   A+ LL +AG   G  +T+
Sbjct: 320 INRQNILDSVYYGTGSIAFTILPPTSWAYQQDTAQIRYDRNYAQALLREAGFATGLELTM 379

Query: 427 WAMPVE-RSYNPNATKMAELIQRYLRDVGVEATIVSYDWTTFRRHLQEGLHDSVLIGWSA 485
            ++PVE ++YNP+  K AELIQ  L D+GV   ++S D +  +        D  L GW+ 
Sbjct: 380 -SVPVEPKAYNPSPRKTAELIQANLADIGVTLRLISEDRSERQELSIRNNIDLYLSGWTG 438

Query: 486 DNGDPDNFYRPLLSCGAIPSGTNRAMWCSEDYDKLLNDALQTDDIEERTAIYRQVNRLLY 545
           D GDPDNF RPLLSC +  +G N +MWC  D+D LL+ AL+ +    R  +Y Q   +L 
Sbjct: 439 DTGDPDNFLRPLLSCDSNRAGLNVSMWCDSDFDFLLDLALEANKPRYRLNLYHQAQNILN 498

Query: 546 ERLPLVPIAHAYRYQAYRNELEGMTINPFGGVRFGGVKK 584
           +  P++P+AH  ++ AY   L G+ I+PF    F  V++
Sbjct: 499 QEFPVIPLAHGIQFTAYSKSLTGIRISPFNVQPFNTVER 537