Pairwise Alignments

Query, 318 a.a., Inner membrane protein YrbG from Alteromonas macleodii MIT1002

Subject, 316 a.a., sodium/calcium exchanger (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  228 bits (582), Expect = 1e-64
 Identities = 124/306 (40%), Positives = 193/306 (63%), Gaps = 9/306 (2%)

Query: 11  GLIVLSWSADRFVYGASALAKNIGISPMMIGLTIVAMGSSAPEIVVSAIASANGNMNTAV 70
           G ++L+  A+  V GA+ +A  +GI+P++IGLTIVA G+SAPE+ VS  A+  GN   A+
Sbjct: 10  GFLILTLGAEALVRGATTIALRLGITPLVIGLTIVAFGTSAPELAVSVKAALAGNSGIAL 69

Query: 71  GNALGSNITNIALVLGITALVKPLLVSSTTLKRELPALLIISLIAIGFMFDGELKSYEGI 130
           GN +GSNI NI L+LGITAL++P+ V S  +KR++P +++ S++  G + DGEL   +G+
Sbjct: 70  GNVIGSNIVNIGLILGITALIRPIEVKSEMVKRDIPIMILASMLFWGLLLDGELSLIDGV 129

Query: 131 ILLGLFIFVLAMMAWLSLQVDKEDPLVAETADEIPKGVSNTSALIWIGVGLVILPLSAHF 190
           ILL    F+L  + +        +    E  +E PK  +   +L++I VG+ +L      
Sbjct: 130 ILLS---FMLGYLVFSYFSAKNTNDADGEVIEEGPK--NPLLSLLFIAVGISMLVGGGIL 184

Query: 191 LVNSAVEIARYMGISDLVIGLTIIAFGTSLPELAASVAGVLKGEDDLALGNIIGSNIFNL 250
            VN AV++A+  G+S+++IGLTI+A GTS+PEL  SV   LKG+ D+A+GNI+GSNIFN+
Sbjct: 185 FVNGAVDLAKVFGVSEIIIGLTIVAIGTSMPELVTSVLAALKGQSDIAIGNIVGSNIFNI 244

Query: 251 LAVLGMPGLIAPGILDPDVYNRDMYVMLGLTLLLFLFSFDLIGKRTISRTNGFILLACFI 310
           L +LG+  ++ P +      + D  VML   +++  F++   G R I R  G  LL  ++
Sbjct: 245 LGILGVTAIVYP-VSGLGFQSLDFIVMLAFAVVILPFAW--TGLR-IGRREGATLLIAYL 300

Query: 311 GYQFWL 316
           GY  +L
Sbjct: 301 GYLIYL 306



 Score = 85.5 bits (210), Expect = 2e-21
 Identities = 54/153 (35%), Positives = 84/153 (54%), Gaps = 26/153 (16%)

Query: 2   LLNIVIFLVGLIVLSWSADRFVYGASALAKNIGISPMMIGLTIVAMGSSAPEIVVSAIAS 61
           LL+++   VG+ +L      FV GA  LAK  G+S ++IGLTIVA+G+S PE+V S +A+
Sbjct: 165 LLSLLFIAVGISMLVGGGILFVNGAVDLAKVFGVSEIIIGLTIVAIGTSMPELVTSVLAA 224

Query: 62  ANGNMNTAVGNALGSNITNIALVLGITALVKPLLVSSTTLKRELPALLIISLIAIGFMFD 121
             G  + A+GN +GSNI NI  +LG+TA+V P                   +  +GF   
Sbjct: 225 LKGQSDIAIGNIVGSNIFNILGILGVTAIVYP-------------------VSGLGF--- 262

Query: 122 GELKSYEGIILLGLFIFVLAMMAWLSLQVDKED 154
              +S + I++L  F  V+   AW  L++ + +
Sbjct: 263 ---QSLDFIVMLA-FAVVILPFAWTGLRIGRRE 291