Pairwise Alignments

Query, 317 a.a., Tyrosine recombinase XerD from Alteromonas macleodii MIT1002

Subject, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

 Score =  374 bits (961), Expect = e-108
 Identities = 189/312 (60%), Positives = 234/312 (75%)

Query: 4   VIEHMHNRRYAKRSIELYSKWIISFIRFNNNRHPSEMGDKEVEVFLSHLVNAKNVAPATQ 63
           V E M  R YAK++IE Y  WI  +I F+N +HPS MGDKEVE FL++L     VA  TQ
Sbjct: 9   VREFMQTRYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQ 68

Query: 64  ASALNALAFLYRDILERPLSCELNFVSSRRQAKLPVVLTQEEVVSLFEQIPANLKLPISL 123
           + ALN+L+FLY++IL+ PLS E+ F  S+ + KLPVVLT++E+  L E +    +LPI L
Sbjct: 69  SLALNSLSFLYKEILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDPKHQLPIKL 128

Query: 124 LYGSGLRLMEAVRLRVKDIDFDYNAIRIWDGKGGKHRIVTLAAELKPGLTRQIAMVENFL 183
           LYGSGLRLME +RLRV+DIDFDY AIRIW GKGGK+R VTLA EL P L  QIA+ + + 
Sbjct: 129 LYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYY 188

Query: 184 AADLENPKYAGVYLPHRLRLKYKNAPRELGWHYLFPSSRLSVDPESKRVRRHHIDESSIQ 243
             DL    Y GV+LP  L+ KY NAP E  WHYLFPS +LS+DPES  +RRHH++E+ +Q
Sbjct: 189 DRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQ 248

Query: 244 KAIRNTAKTCDIKKKVTPHTLRHSFATHLLQSGADIRTVQTQLGHSDVKTTQIYTHVLQQ 303
           KA+R +A+   I+K VT HTLRHSFATHLL+ GADIRTVQ QLGH+DVKTTQIYTHVL +
Sbjct: 249 KAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 308

Query: 304 GAQGVVSPLSRV 315
           GA GV+SPLSR+
Sbjct: 309 GASGVLSPLSRL 320