Pairwise Alignments

Query, 317 a.a., Tyrosine recombinase XerD from Alteromonas macleodii MIT1002

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score = 95.5 bits (236), Expect = 1e-24
 Identities = 80/257 (31%), Positives = 125/257 (48%), Gaps = 45/257 (17%)

Query: 53  VNAKNVAPATQASALNALAFLYRDILERPLSCE---LNFVSSRRQAKLPVVLTQEEVVSL 109
           ++ +N  P ++A  L+A+  L++ +    +  +      VS +   +LP  L++ +V +L
Sbjct: 66  LSEQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEAL 125

Query: 110 FE----QIPANL--KLPISLLYGSGLRLMEAVRLRVKDIDFDYNAIRIWDGKGGKHRIVT 163
                 Q P  L  K  + LLY +GLR+ E V L ++++      +R+  GKGGK R+V 
Sbjct: 126 LSAPDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVM-GKGGKERLVP 184

Query: 164 LAAELKPGLTRQIAMVENFLAADLENPKYAGVYLPHRLRLKYKNAPRELGWHYLFPSSRL 223
           +           I  +E FL                 L L  + +        +FPSSR 
Sbjct: 185 MGENA-------IEWIETFLQQG------------RSLLLGEQTSD------IVFPSSR- 218

Query: 224 SVDPESKRVRRHHIDESSIQKAIRNTAKTCDIKKKVTPHTLRHSFATHLLQSGADIRTVQ 283
                +++   H I   ++   I       D++K ++PH LRH+FATHLL  GAD+R VQ
Sbjct: 219 -GQQMTRQTFWHRIKHYAVIAGI-------DVEK-LSPHVLRHAFATHLLNYGADLRVVQ 269

Query: 284 TQLGHSDVKTTQIYTHV 300
             LGHSD+ TTQIYTHV
Sbjct: 270 MLLGHSDLSTTQIYTHV 286