Pairwise Alignments

Query, 449 a.a., Group II intron-encoded protein LtrA from Alteromonas macleodii MIT1002

Subject, 567 a.a., Retron-type RNA-directed DNA polymerase (EC 2.7.7.49) from Pseudomonas fluorescens FW300-N2E2

 Score =  128 bits (321), Expect = 5e-34
 Identities = 119/375 (31%), Positives = 185/375 (49%), Gaps = 42/375 (11%)

Query: 41  AWKQVRANKG--AAGMDGMTIDDFPAWANAGNWKRVMTELRSGQYQPSPVKRVEIDKPDG 98
           A ++V  N+G   AG+D +  D   A      WK      R G Y+P P++RV I K +G
Sbjct: 67  AVRRVTENQGKRTAGVDRVLWDTPDA-----KWKAANGLKRHG-YKPRPLRRVFIPKSNG 120

Query: 99  GKRQLGIPTIVDRVIQQAIAQVLTPIFDPTFSDNSFGFRPHRNGQQAVKQVNSII--KTG 156
            +R LGIPT+ DR +Q      L PI + T   NS+GFR  R+   A+ Q+   +  K  
Sbjct: 121 KERPLGIPTMTDRAMQALYLLALAPIAETTGDPNSYGFRIERSTADAMGQLFVCLSKKVS 180

Query: 157 RRFAVDVDLSKFFDRVNHDLLMTYLGYKVKDKRLLKLIKRYLRAGILCKTKGDNQLYSES 216
            ++ ++ D+   FD +NHD L+T +     DK +L   +++L+AG++ K     QL + +
Sbjct: 181 AQWVLEADIKGCFDHINHDWLITNV---PTDKVVL---RKWLKAGVIHK----GQLQA-T 229

Query: 217 REGVPQGGPLSPLLANIMLDPLDKEL---------EKRGHEFARYADDFTILVKTPRSGE 267
             G PQGG +SP LAN++LD L+ +L         +K      RYADDF I   +    E
Sbjct: 230 DAGTPQGGIVSPSLANLVLDGLESQLKQHLGVTKAKKLKINVVRYADDFVITGTSREVLE 289

Query: 268 -RVLNSISRFLCHRLKLVVNTTKSHVVKTSES-KFLGFTFKA--GRIQWHP--KTLMKFK 321
             V   + +FL  R  L ++  K+ VV   E   FLG+ F+   G++   P  K +  F 
Sbjct: 290 TEVRPWVEQFLAVR-GLQLSLEKTRVVHIKEGFDFLGWNFRKYDGKLLIKPSKKNVKAFY 348

Query: 322 QQVRRLTNRNWGVSMQYQLFKLSQYLRGWINYFGIASGYQRCVELDHWIRRRVRMAYWRQ 381
            +VR + + +  V  +  + +L+  LRGW  Y       +    +D+ I     +A WR 
Sbjct: 349 SKVREVISTSKTVRQEDLIRQLNPILRGWAFYHQPVVAKKAYSRMDYMI----FLALWR- 403

Query: 382 WRKPRTKVRHLMRLG 396
           W K R   + L  +G
Sbjct: 404 WAKRRHPKKTLQWIG 418