Pairwise Alignments

Query, 349 a.a., Transposase IS116/IS110/IS902 family protein from Alteromonas macleodii MIT1002

Subject, 337 a.a., transposase IS116/IS110/IS902 family protein (RefSeq) from Shewanella loihica PV-4

 Score = 62.8 bits (151), Expect = 1e-14
 Identities = 78/329 (23%), Positives = 137/329 (41%), Gaps = 13/329 (3%)

Query: 13  GIDLHTRLLYVCIIDNENNILVHEKIDDSPDKLLALLKPYLGNIVVGVECMHCWYWVSDF 72
           GIDL   +L VC ++     L +  +  +  +LL  L  Y   ++    C    YW  + 
Sbjct: 7   GIDLAKNVLQVCGVNQVGKTLFNRTVKRT--QLLKTLVQYPDAVIAMEACSGSNYWGREL 64

Query: 73  CEEHNIDFILGHALYMKAIHAGKTKNDKIDALKIAKLMRGGNFPLAHAYSKEHRSIRDAL 132
                 +  L    ++K    G  KND+ DA  I +     N       +     I  + 
Sbjct: 65  LSR-GFEVKLIPPQHVKPFVKGN-KNDRNDAFAICEAAMRPNIIFVKPRTLAQVDIIISH 122

Query: 133 RRRTHIMRMSAQLKAHVSSTISQYNLPALESR--LNLQNSPDREKMHHFFPDEAVQKSMD 190
           R R   +R+   L   +   +S+Y +   + R  LNL      E   +     A +   +
Sbjct: 123 RIRERRIRVRTALTNQIRGLLSEYGIVIPKGRDPLNLALPELLEDADNSLTTTARRYIRE 182

Query: 191 LNLNIIETMVSELYKIEHYVKTQAQTHRATDLHILKSFPGIGKILALTILYEVGDIKRFP 250
           L L+ +  + + +  +E  ++ QA+ H   D   L +  G+ +I+A   +   GD   + 
Sbjct: 183 L-LDELYAINASIKALEKEIRLQARNHE--DTKRLTAIRGVAEIIATASVSFAGDGSGYQ 239

Query: 251 SVQKFASYSRLVKCKAESAGKTHGTQGNKIGNAHLKWAFSEAA---VLYLKGNDNAKRYL 307
           + + F++   LV  +  S GK       K GN++L+    + A   + Y K ND+     
Sbjct: 240 NGRHFSANLGLVPKEFSSGGKQKLGAITKRGNSYLRRQLIQGAWSVIRYAKNNDDRLSVW 299

Query: 308 A-KLQKRMSKAKALSALAHKIGRCTYFML 335
           A K+ +R  K KA  A+A+K+ R  + ML
Sbjct: 300 ARKVIERRGKQKAAVAVANKLARIIWAML 328