Pairwise Alignments

Query, 936 a.a., putative transmembrane protein, RNA-binding region RNP-1 (RNA recognition motif) from Agrobacterium fabrum C58

Subject, 972 a.a., N-terminal double-transmembrane domain from Phaeobacter inhibens DSM 17395

 Score =  598 bits (1543), Expect = e-175
 Identities = 384/991 (38%), Positives = 532/991 (53%), Gaps = 89/991 (8%)

Query: 8   FTSPYILFGLLALPAIWWLLRLTPPRPKAEVFPPLKILATVLKREETPSKSPWWLTLLRI 67
           FT+P++L  LLALP +W LLR  PP P+  +FP + +L  +   +    ++PWWL LLR+
Sbjct: 9   FTAPWLLLALLALPLLWLLLRAVPPAPRTRLFPAVTLLLGLRDDDSLSDRTPWWLLLLRL 68

Query: 68  ALAAAVIFALADPVVNPRNNSIAGSGPLVLVVDNSWASAPDWERRVATAQALIGDAERAD 127
              AA I  LA PV+NP      G GPL++V+D SWA APDW+R       L+ +A RAD
Sbjct: 69  MAVAAAIVGLAGPVLNPTATP-TGRGPLLVVLDGSWAGAPDWDRTREEIDHLLAEAGRAD 127

Query: 128 RPVSI-SFTADAEHD---AVSGTTAVALDKLAAAKPKPLVPDRARTAEAITEALNGTAPG 183
           RPV++   TA    +   A S    +  +   A +P P    RART     + L G    
Sbjct: 128 RPVAVLRLTAPQPPEFQSAASWRRQIIGEAPQAWQPTPEQLARARTQ---IDTLEGGFDS 184

Query: 184 TLAYIADGVQTAQDESAMRTL-----------ASLSPAEFRIVRGDGKAVAAITDATNNA 232
              + +DG+  A  +  + TL           A+   A   +V  DG     +  ++  A
Sbjct: 185 L--WFSDGLTYAGRDDLLATLRQRGRLTVYEHATPRLALRPVVYVDGAMEITVVRSSPQA 242

Query: 233 ---DAMSVTLSRLDTAQAASLTVNAQDSQG--RILANGTASFAP------GAAETTATVE 281
              D    T       Q  ++     D  G  R L + T  FA         +E TA + 
Sbjct: 243 ASGDGRGATGPGAGEDQTVTVLAKGPDPGGTMRTLGSVTVDFADPDSTSADGSEATARLS 302

Query: 282 APFELRNDFARLSIEGVSTAGAVHLLDDGFRRRRVALLAGETGNDFQPLLQPLYYISRAL 341
            P ELR       ++G ++AGAV L DDG RRR VAL++ ++GN+   LL PL+Y+ +AL
Sbjct: 303 LPAELRARIRLFELQGQTSAGAVSLADDGLRRREVALISAQSGNEGLALLSPLHYLRKAL 362

Query: 342 QPFVDLIPQRQADLAQAIPEILQSNPSVIVMADIGRLPQETYVPLQRWLAGGGTLIRFAG 401
            P  DL+    +DL       L +NP VIV+AD  RLP +    +  W + GG L+RFAG
Sbjct: 363 APTADLLEGGLSDL-------LPANPDVIVLADTARLPPDQEAAVVDWASDGGLLLRFAG 415

Query: 402 PRLAAAPA----DDPLVPVTLRQGERALGGALSWAEPQPLADFPAFGAFAGMPKADGILV 457
           PRLAA+      ++PL+PV LR G R++GGA+SW EP+ LA F     F G+     + V
Sbjct: 416 PRLAASDTARTDEEPLLPVRLRIGGRSIGGAMSWGEPKTLAPFAEDSPFFGLNIPPDVTV 475

Query: 458 KRQVLAEPTPDLAERTWASLADGTPLVTTRNVEAGRIVLFHVSAEASWSDLPISGHFVDM 517
             QV+A+P P LAER  A L+DGTPLVT + +  G+IVLFHV+A A WS LP+SG FV M
Sbjct: 476 SSQVVAQPDPSLAERVIAELSDGTPLVTRKPLGNGQIVLFHVTANAEWSSLPLSGLFVQM 535

Query: 518 LRRIVQLSKAGGASASANAPATALPPFRLLTAEGAM---SAEIGTARPLEMRAGQPPRTG 574
           + R+  +S     + + +   T   P ++L   G +    A  G A P  + A   P   
Sbjct: 536 MERLA-ISSGSKPAEAVDLEGTTWAPLQVLDGFGDLFDADALPGVAGPDLIAATAGP--- 591

Query: 575 FDNPPGLYGTEDGFVALNLLPAGATLR----PLDTSAAGVSTTNEALIGETAKSLRPALF 630
            +  PGLY   D  +A N++     L     PL     G   T E  +G    SL     
Sbjct: 592 -ELQPGLYQNGDRRIARNVMRTEDQLTPAQWPLGVPVNGYGATPERPLGGLLISL----- 645

Query: 631 IAAFMMLIADSLIVLFMNGAFARLPKARS----ATVATLLLAL----------------- 669
             A ++L  D +  L ++G   R P+  +      ++ LLLA                  
Sbjct: 646 --ALLLLALDVIAALLLSGLLPRQPQTSANKMRNMISLLLLATSVWVISPGHNTRSHAQG 703

Query: 670 GAFAAMSPTDARADDPKPGDEQIFERLDTTHLAYVRTGEDDVDRISEQGLQGLSEFLTWR 729
            A A    T +   DP   D    ER     LA+V TG+  VD+++  GLQGLS  L +R
Sbjct: 704 NAIAIEEVTPSPPSDP-AADALAAERAAELTLAHVLTGDPQVDQLARDGLQGLSNTLRFR 762

Query: 730 TTLEPGQPVGLDISKDELSFYPIIYWPVSATAPMPSSAAISRIDAYMRAGGTVLFDTRDQ 789
           T++EP  P  +D+ +DEL+FYP++YWPV+A   MPS AA  R++ Y+R GG +LFDTRD 
Sbjct: 763 TSVEPAPPAAVDLERDELAFYPLLYWPVTANQAMPSGAAYDRLNTYLRTGGMILFDTRDA 822

Query: 790 FSSLDIGATSANGERLQAILANIDIPPLEPVPEDHVLTRSFYLLTNFPGRYNGSPLWVES 849
                 GA+S  G RLQ +   +D+PPLEP+P DHVLTR+FYLL +FPGR+N   +WVE+
Sbjct: 823 -DLTRAGASSPAGRRLQQLALRLDVPPLEPLPADHVLTRAFYLLQDFPGRHNRGAVWVEA 881

Query: 850 RQGAAKTTSGL--SSSGDGVTPIMITGNDFAGAWAVDAQGAPVLPTVP--PDEMQREHAF 905
               A+   G+   +  DGVTP++I GND+A AWAVD  G P+LP       E QRE A+
Sbjct: 882 APADAQQVEGIPFRNLNDGVTPVVIGGNDWAAAWAVDDNGRPLLPVGRGYAGERQRELAY 941

Query: 906 RSGVNIMMYMLTGNYKADQVHVPALLERLGQ 936
           R GVN++M++LTGNYK+DQVHVPALL+RLGQ
Sbjct: 942 RFGVNLVMHVLTGNYKSDQVHVPALLDRLGQ 972