Pairwise Alignments

Query, 286 a.a., ABC transporter, membrane spanning protein (agrocinopine) from Agrobacterium fabrum C58

Subject, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

 Score =  162 bits (411), Expect = 6e-45
 Identities = 89/265 (33%), Positives = 144/265 (54%), Gaps = 5/265 (1%)

Query: 22  ISIWLCLIWIAVVVFVDITAQWLAPFDYLQQSPLARFAPPGAPGHLLGTDYLGRDVLSNI 81
           +S+++ ++    VVF+ +     + + Y      A  A P A  H  GTD LGRD+    
Sbjct: 41  VSLFVLMLITLAVVFLPM----FSAYSYEDTDWYAMHAGPSAE-HWFGTDALGRDLFVRT 95

Query: 82  LVATQTSLMIALVGSLICAFIGTTLGFLAAHFGGWVDNLIMGFADAKASVPFIIFALGVL 141
           LV  + SLM+ ++G+L+   IGT  G  +   GG  D ++M   +   ++PF+   + ++
Sbjct: 96  LVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDRVMMRILEILYAIPFMFLVIVLV 155

Query: 142 AFLGSSPLILLMLVGVASFERYARLTRGLVLSANQEGYAEAARIVGVPSLRIYVRHVLPN 201
            F G + +++ + +G  ++   AR+ RG  LS   + + EAA + GV    I  RH++PN
Sbjct: 156 TFFGRNIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVSKWNIITRHIVPN 215

Query: 202 IAGPLIVQITLNFPDIILLESGLSFLGLGIQPPETSLGLMVADGRNYIAIAWWLIALPGV 261
           + G + V  TL  P +IL ES LSFLGLG+Q P TS G ++ +G N + +A W +  P  
Sbjct: 216 VLGIVAVYSTLLIPSMILTESFLSFLGLGVQEPMTSWGALLQEGANTMEVAIWQLLFPAA 275

Query: 262 VIVLTTLSISLLGDYLRDRFDARLR 286
            +VLT    + +GD LRD  D + R
Sbjct: 276 FMVLTLFCFNYVGDGLRDALDPKDR 300