Pairwise Alignments

Query, 1087 a.a., DNA polymerase III, alpha chain from Agrobacterium fabrum C58

Subject, 1025 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Pseudomonas fluorescens FW300-N2E2

 Score =  894 bits (2311), Expect = 0.0
 Identities = 485/1038 (46%), Positives = 665/1038 (64%), Gaps = 16/1038 (1%)

Query: 1    MSYAELQVTTHFSFLRGASSAQELFETAKALGIEALGVVDRNSLAGIVRALEASRATGLR 60
            + YAEL   ++FSF RGASSA EL   AK  G +AL + D  +LAGIVRA +A++   L+
Sbjct: 3    VEYAELHCLSNFSFQRGASSALELCRRAKQQGYQALAITDECTLAGIVRAWQAAKELELQ 62

Query: 61   LVIGCRLDLADGMSVLVYPTDRAAYSRLTRLITLGKSRGGKNNCLLHWDDVVAYTDGMIG 120
            L++G  + + +G  +++   D   Y  L RLIT  + R  K +  +  +D      G++ 
Sbjct: 63   LIVGSEIQVENGPKLVLLVEDLEGYQALCRLITRARRRSEKGHYRIVREDFDQPLSGLLA 122

Query: 121  ILVPDLPDDLCGIQLRKMAELFGDRAYVSLCLRRRQNDQLRLHEISNLATRFKVRTVVTN 180
            + + +  D       R +   F  R ++++ L   Q+D+ RL +   LA R  +  V + 
Sbjct: 123  LWIAEGKD--AEEHGRWLQPTFAGRLWLTVQLHCAQDDRRRLADSLALAERLDLPIVASG 180

Query: 181  DVLFHEPGRRQLQDIVTCIRTRTTIDEVGFERERHADRYLKPPEEMERLFPRYRQALART 240
            DV  H  GRR LQD +T IR   T+ E G     + +R+L+  +++  L+PR    L  T
Sbjct: 181  DVHMHVRGRRALQDTMTAIRHHVTVAEAGQRLHPNGERHLRSRKDLADLYPR--ALLDET 238

Query: 241  MEIVRRCTFSLEELTYQYPEEAIVPGKDAQASLEHYVWQCVPDRYPEGLPPDVLKVVRHE 300
            + I RRCTF L +L YQYP E +  G D  + L     + + +R+ +G+   V   +  E
Sbjct: 239  LNIARRCTFDLGQLRYQYPRELVPEGHDPASWLRELTERGMRERWKDGVTDKVRAQIDKE 298

Query: 301  LDLIRTMKYAPYFLTVFSIVRYARSQGILCQGRGSAANSAVCYILGITSIDPSTNDLLFE 360
            L LI  + Y  YFLTV  IV +ARS+ ILCQGRGSAANSAVCY LGIT IDPS   LLFE
Sbjct: 299  LSLIAELGYDSYFLTVQDIVSFARSRHILCQGRGSAANSAVCYALGITEIDPSLTSLLFE 358

Query: 361  RFVSQERDEPPDIDVDFEHERREEVIQWIYRTYTREKAALCATVTRYRARGAIRDVGKAL 420
            RF+S+ER+EPPDIDVDFEH+RREEV+Q++++ Y R +AAL A V+ Y   GA+RDV KAL
Sbjct: 359  RFLSRERNEPPDIDVDFEHDRREEVLQYVFQRYGRHRAALTAVVSSYHGAGAVRDVAKAL 418

Query: 421  GLPEDVIKALSSGMWSWSEEVCD-RNVRELNLNPDDRRLVLTLKLAQQLMGAPRHLGQHP 479
            GLP D + AL+     WS+E      +RE   +PD   L   L L +QL+G PRHL QHP
Sbjct: 419  GLPPDQVNALADCCGRWSDEAPPVERLREGGFDPDSPVLRRVLSLTRQLIGFPRHLSQHP 478

Query: 480  GGFVLTHDRLDDLVPIEPATMKDRQIIEWDKDDVEALKFMKVDILALGMLTCMAKAFDLI 539
            GGFV++   LD LVP+E A M +R II+WDKDD++A+  +KVDILALGML+ + + FDLI
Sbjct: 479  GGFVISEQPLDTLVPVENAAMAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLI 538

Query: 540  REHKDRDLDLSKIEQEDSVTYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVA 599
              ++ +   L+ + Q+D  TY MI +ADT+G FQIESRAQM+MLPRL+P+TFYDLV++VA
Sbjct: 539  ERYRGQRYALASLPQDDRATYEMISRADTIGVFQIESRAQMSMLPRLRPKTFYDLVIEVA 598

Query: 600  IVRPGPIQGDMVHPYLRRREGKEAVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFT 659
            IVRPGPIQG MVHPYLRRR  +EAV YP+  L+ VL +TLGVPLFQE  M++A+V A +T
Sbjct: 599  IVRPGPIQGGMVHPYLRRRNKEEAVTYPSEALKQVLNRTLGVPLFQEQVMQIAIVAADYT 658

Query: 660  GGEADQLRKSMATFKFTGGVSQFKDKLVSGMVRNGYAPEFAEKTFSQLEGFGSYGFPESH 719
             GEADQLR+SMA +K  GG+   +++L  GM +NGY  EFA + F Q++GFG+YGFPESH
Sbjct: 659  PGEADQLRRSMAAWKRHGGLEPHRERLAQGMKKNGYTAEFAAQIFEQIKGFGNYGFPESH 718

Query: 720  AASFALIAYASSYIKCHYPEAFCAALINSQPMGFYAPAQIVGDARAHGVEVRPVCINRSR 779
            AASFAL+ YASS++KCH P AF  ALINS PMGFY+P QI+ DAR H + +RPV +  S 
Sbjct: 719  AASFALLTYASSWLKCHEPAAFACALINSWPMGFYSPDQILQDARRHQLSIRPVDVRASD 778

Query: 780  WDCTLERIGNSDRHAVRLGFRQVKGLAVADAARVVAARMNNAFVSVDDMWRRSGVPSEAL 839
            WDC+LE + +  + A+R+G   +KG    DA R+ AAR +  F  V D+  R+ + + A 
Sbjct: 779  WDCSLEPM-DGRQPAIRMGLCMIKGFREEDARRIEAARRHRPFSDVADLGERAQLDARAQ 837

Query: 840  VQLAKADAFLPSLKLERRDALWAIKALRDEPLPLFAAAAEREMAAIAEQQEPGVALRQMT 899
             QLA A A L  L  +R  A W +  ++ + L LF        A +  Q+EP VAL + T
Sbjct: 838  AQLADAGA-LQGLAGDRHRARWEVAGVQKQ-LGLF--------AGLPCQEEPPVALPKPT 887

Query: 900  DGHNVIEDYSHTGLTLRQHPIAFLRKDLSVRNIITCAEAMNSRDGRWVYTAGLVLVRQKP 959
             G N+  DY+  G TL  HP+A LR +L  R   +  E      GR V  AGLV  RQ+P
Sbjct: 888  LGENLFADYTTLGTTLGPHPLALLRPELRARRCRSSRELQEVEHGRNVSVAGLVTGRQRP 947

Query: 960  GSAKGVMFITIEDETGPANLVVWPTLFEKRRRAVLGSSMMAINGRIQREGEVVHLVAQQL 1019
            G+A GV F+T+EDE G  N+VVW  L E++R+ ++GS ++ ++GR +  GEV HL+A +L
Sbjct: 948  GTASGVTFVTLEDEFGNLNVVVWRDLAERQRKTLVGSQLLKVDGRWESVGEVRHLIAGRL 1007

Query: 1020 FDLSGDLTGLADRDEEFK 1037
             DL+  L G+  +  +F+
Sbjct: 1008 SDLTELLAGIQVQSRDFR 1025